RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 RALGAPA1Q6GYQ0 2036 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 GOLGA6L7A0A1B0GV03 622 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 TCRBV7S3A2A0A539 114 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 A6NCN8 305 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 ZNF840PA6NDX5 716 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 FAM171A2A8MVW0 826 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 KCNU1A8MYU2 1149 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 E9PAM4 449 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 F8W8V4 182 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 H0YHG0 523 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 GOLGA8MH3BSY2 632 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 H3BUI4 141 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 DNALI1O14645 258 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 TRDMT1O14717 391 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 MAP2K7O14733 419 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 TP73O15350 636 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CCL16O15467 120 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 COCHO43405 550 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 BANF1O75531 89 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 RFPL2O75678 378 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CNTN5O94779 1100 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 WNT11O96014 354 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 GLUD1P00367 558 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 APOEP02649 317 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 LRG1P02750 347 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CSTBP04080 98 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 C8AP07357 584 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 DBHP09172 617 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CSH1P0DML2 217 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CSH2P0DML3 217 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 IRF1P10914 325 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 EPCAMP16422 314 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 ZFXP17010 805 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 GJA1P17302 382 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CCNCP24863 283 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 EPHB2P29323 1055 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 RPL22P35268 128 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 HSPA9P38646 679 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 MAGEA8P43361 318 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 MAPK9P45984 424 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 NUMBP49757 651 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 TUBP50607 506 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 EPHB3P54753 998 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 AIF1P55008 147 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 DRG2P55039 364 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 MRPS35P82673 323 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 CREMQ03060 361 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 GAD2Q05329 585 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CCDC15Q0P6D6 951 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 AP1B1Q10567 949 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CALCOCO2Q13137 446 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 IKZF1Q13422 519 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CAMK1Q14012 370 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 DAG1Q14118 895 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 VEPH1Q14D04 833 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 PAFAH1B3Q15102 231 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 UAP1Q16222 522 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 SLC45A4Q5BKX6 768 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 HECTD3Q5T447 861 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 FAXCQ5TGI0 409 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 MANEALQ5VSG8 457 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 ANKRD22Q5VYY1 191 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 RAP1GAP2Q684P5 730 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 PGBD2Q6P3X8 592 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 RHBDF2Q6PJF5 856 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 TFAP2DQ7Z6R9 452 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 DNAJB7Q7Z6W7 309 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 TMEM150AQ86TG1 271 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CIR1Q86X95 450 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 PROSER1Q86XN7 944 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CDKL3Q8IVW4 592 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 SYTL1Q8IYJ3 562 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 ATP6V0D2Q8N8Y2 350 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 PDZD8Q8NEN9 1154 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 GPR156Q8NFN8 814 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CCDC110Q8TBZ0 833 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 PHOSPHO2Q8TCD6 241 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 SLC22A17Q8WUG5 538 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 UBLCP1Q8WVY7 318 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 ART4Q93070 314 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 SH3KBP1Q96B97 665 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 LRRC45Q96CN5 670 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 MTFMTQ96DP5 389 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 MYEOVQ96EZ4 313 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 PEX11GQ96HA9 241 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 CELF6Q96J87 481 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 OLFM3Q96PB7 478 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 SLC22A12Q96S37 553 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 HAPLN3Q96S86 360 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 LGMNQ99538 433 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 FRMD8P1Q9BZ68 369 aaPredicted RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 NACA2Q9H009 215 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 KLC2Q9H0B6 622 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 ADAM7Q9H2U9 754 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 USP29Q9HBJ7 922 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 TLR9Q9NR96 1032 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.21□□□□□ -1.74
CD44-226ENST00000527889 OLA1Q9NTK5 396 aaKnown RBP4.21□□□□□ -1.74
CD44-226ENST00000527889 HCFC1R1Q9NWW0 138 aa4.21□□□□□ -1.74
CD44-226ENST00000527889 SMPD4Q9NXE4 827 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms