RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PIGMQ9H3S5 423 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 RANGRFQ9HD47 186 aaPredicted RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 SCRT2Q9NQ03 307 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 KLHL9Q9P2J3 617 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 OR14J1Q9UGF5 321 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 ZHX1Q9UKY1 873 aaPredicted RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 FAF1Q9UNN5 650 aaPredicted RBP3.82□□□□□ -1.8
CD44-217ENST00000525348 MAU2Q9Y6X3 613 aa3.82□□□□□ -1.8
CD44-217ENST00000525348 ATP2A1O14983 1001 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 IPO8O15397 1037 aaKnown RBP3.81□□□□□ -1.8
CD44-217ENST00000525348 KCNN4O15554 427 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 ZG16O60844 167 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 IGHV4-39P01824 125 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 SPARCP09486 303 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 BDNFP23560 247 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 CDC16Q13042 620 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 MAD2L1Q13257 205 aaPredicted RBP3.81□□□□□ -1.8
CD44-217ENST00000525348 G3BP1Q13283 466 aaKnown RBP eCLIP3.81□□□□□ -1.8
CD44-217ENST00000525348 TMEM35AQ53FP2 167 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 LRIF1Q5T3J3 769 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 LCE1FQ5T754 118 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.81□□□□□ -1.8
CD44-217ENST00000525348 SEPT14Q6ZU15 432 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 Q75L30 129 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 GSTA5Q7RTV2 222 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 DIS3L2Q8IYB7 885 aaKnown RBP3.81□□□□□ -1.8
CD44-217ENST00000525348 PCYOX1LQ8NBM8 494 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 FAM149B1Q96BN6 582 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 ARHGEF26Q96DR7 871 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 EGLN2Q96KS0 407 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 HARBI1Q96MB7 349 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 SMC6Q96SB8 1091 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 NEURL2Q9BR09 285 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 PDZD7Q9H5P4 517 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 ZNF696Q9H7X3 374 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 SMC3Q9UQE7 1217 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 TMEM98Q9Y2Y6 226 aa3.81□□□□□ -1.8
CD44-217ENST00000525348 DVL1O14640 695 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 HS3ST1O14792 307 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 JRKO75564 520 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 ICAM1P05362 532 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 CLEC3BP05452 202 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 FAM200BP0CF97 657 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 BSGP35613 385 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 CDKN1AP38936 164 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 DCTP40126 519 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 ARCN1P48444 511 aaKnown RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 AMPHP49418 695 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 DVL1P1P54792 670 aaPredicted RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 RPS3AP61247 264 aaKnown RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 EEF1A1P68104 462 aaKnown RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 SOWAHCQ53LP3 525 aaPredicted RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 ZNF805Q5CZA5 627 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 PDSS1Q5T2R2 415 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 EEF1A1P5Q5VTE0 462 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 ZNF704Q6ZNC4 412 aaPredicted RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 SDCCAG8Q86SQ7 713 aaPredicted RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 CREBRFQ8IUR6 639 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 ADSSL1Q8N142 457 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 OR1J2Q8NGS2 313 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 SNRNP27Q8WVK2 155 aaKnown RBP3.8□□□□□ -1.8
CD44-217ENST00000525348 RFFLQ8WZ73 363 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 SMARCE1Q969G3 411 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 ZNF524Q96C55 264 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 PPM1MQ96MI6 270 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 FKRPQ9H9S5 495 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 NRBP1Q9UHY1 535 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 TCF19Q9Y242 345 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 SMCHD1A6NHR9 2005 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 ARHGEF11O15085 1522 aa3.8□□□□□ -1.8
CD44-217ENST00000525348 FAM237BA0A1B0GVD1 139 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 OR5K3A6NET4 321 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 FAM72CH0Y354 149 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 TMEM178BH3BS89 294 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 CTSVO60911 334 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 RTN3O95197 1032 aaPredicted RBP3.79□□□□□ -1.8
CD44-217ENST00000525348 TBX18O95935 607 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 PAX1P15863 534 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 SSR1P43307 286 aaKnown RBP3.79□□□□□ -1.8
CD44-217ENST00000525348 PLIN5Q00G26 463 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 LMOD3Q0VAK6 560 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 SREBF2Q12772 1141 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 PNLIPRP3Q17RR3 467 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 MYLK3Q32MK0 819 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 RAB6CQ53S08 254 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 FAM72AQ5TYM5 149 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 FAM72DQ6L9T8 149 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 ADAM5Q6NVV9 412 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 MMS22LQ6ZRQ5 1243 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 FAM72BQ86X60 149 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 FOXP4Q8IVH2 680 aaPredicted RBP3.79□□□□□ -1.8
CD44-217ENST00000525348 NAXEQ8NCW5 288 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 ETNPPLQ8TBG4 499 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 HM13Q8TCT9 377 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 TMEM255BQ8WV15 326 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 ST6GAL2Q96JF0 529 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 RAB6CQ9H0N0 254 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 RRAGDQ9NQL2 400 aaPredicted RBP3.79□□□□□ -1.8
CD44-217ENST00000525348 MTMR10Q9NXD2 777 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms