RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 KCNC4Q03721 635 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 CDK18Q07002 472 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 TRIM14Q14142 442 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 PDK1Q15118 436 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 INSCQ1MX18 579 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 BORAQ6PGQ7 559 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 CEACAM20Q6UY09 585 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 ATG14Q6ZNE5 492 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 VSIG1Q86XK7 387 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 RFX6Q8HWS3 928 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 NLGN4XQ8N0W4 816 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 TRAM1L1Q8N609 369 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 AVL9Q8NBF6 648 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 NLGN4YQ8NFZ3 816 aaPredicted RBP11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 SPATA22Q8NHS9 363 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 GLYATL1Q969I3 302 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 RNF25Q96BH1 459 aaPredicted RBP11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 TADA1Q96BN2 335 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 OLFM3Q96PB7 478 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 PLEKHG4BQ96PX9 1271 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 ZSCAN5AQ9BUG6 496 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 MAK16Q9BXY0 300 aaKnown RBP11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 GPR63Q9BZJ6 419 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 EPB41L1Q9H4G0 881 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 MAGEE1Q9HCI5 957 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 TRIM39Q9HCM9 518 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 APMAPQ9HDC9 416 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 RAD18Q9NS91 495 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 SPTLC3Q9NUV7 552 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 GEMIN8Q9NWZ8 242 aaKnown RBP11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 SCHIP1Q9P0W5 487 aaPredicted RBP11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 PILRAQ9UKJ1 303 aa11.39□□□□□ -0.59
HMGCS1-204ENST00000507293 SETXQ7Z333 2677 aaKnown RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 ZNF891A8MT65 544 aaPredicted RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 PDZK1P1A8MUH7 402 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 GPR89AB7ZAQ6 455 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 TERTO14746 1132 aaKnown RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 CHUKO15111 745 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SUV39H1O43463 412 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 MTX2O75431 263 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 MT-CYBP00156 380 aaPredicted RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 GPR89BP0CG08 455 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 TNNT1P13805 278 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 ZFXP17010 805 aaPredicted RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 BPIP17213 487 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 ARHGAP25P42331 645 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 NOP2P46087 812 aaKnown RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 GFERP55789 205 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SLC14A2Q15849 920 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SEPT7Q16181 437 aaKnown RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 PDPK2PQ6A1A2 396 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 PLXDC1Q8IUK5 500 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 TRIM48Q8IWZ4 208 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 KIAA1143Q96AT1 154 aaPredicted RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 CHP1Q99653 195 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 ZPBPQ9BS86 351 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SPRY4Q9C004 299 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SLC25A18Q9H1K4 315 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SLC25A51Q9H1U9 297 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 ADNPQ9H2P0 1102 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 GPN2Q9H9Y4 310 aaPredicted RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 GLOD4Q9HC38 313 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 FBXO8Q9NRD0 319 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 ZNHIT6Q9NWK9 470 aaKnown RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SIDT1Q9NXL6 827 aaKnown RBP11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 OGFRQ9NZT2 677 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SLC23A2Q9UGH3 650 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 DNAJC16Q9Y2G8 782 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 HYOU1Q9Y4L1 999 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 SPO11Q9Y5K1 396 aa11.38□□□□□ -0.59
HMGCS1-204ENST00000507293 A0A0A6YYK5 440 aaPredicted RBP11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 LOC101059948A0A1B0GTJ6 334 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 AURKAO14965 403 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 POLR1CO15160 346 aaPredicted RBP11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 KMOO15229 486 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 NKX2-8O15522 239 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 PMPCBO75439 489 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 STK17BO94768 372 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 NDST3O95803 873 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 VIPP01282 170 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 ANKRD34CP0C6C1 535 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 ZNF7P17097 686 aaPredicted RBP11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 TYRP1P17643 537 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 PTPN3P26045 913 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 MAP4P27816 1152 aaKnown RBP11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 CCR10P46092 362 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 CSRP3P50461 194 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 POLE2P56282 527 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 CDC20Q12834 499 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 KCNAB2Q13303 367 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 PRKD1Q15139 912 aaPredicted RBP11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 KHDC1Q4VXA5 237 aaKnown RBP11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 ODF2Q5BJF6 829 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 LRRC38Q5VT99 294 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 TMEM26Q6ZUK4 368 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 TIPARPQ7Z3E1 657 aaKnown RBP11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 LRRTM4Q86VH4 590 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 RHOT2Q8IXI1 618 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 UNC5BQ8IZJ1 945 aa11.37□□□□□ -0.59
HMGCS1-204ENST00000507293 RNF31Q96EP0 1072 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms