RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 OTCP00480 354 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 MPC1LP0DKB6 136 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 ATP1B2P14415 290 aaPredicted RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 GCAP28676 217 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 FOXN2P32314 431 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 NUDT1P36639 197 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 SPINT3P49223 89 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 PKNOX1P55347 436 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 ZNF234Q14588 700 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CRTC1Q6UUV9 634 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 MMAAQ8IVH4 418 aaKnown RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 OR13J1Q8NGT2 312 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 UBE2E3Q969T4 207 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 NSL1Q96IY1 281 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CCDC28BQ9BUN5 200 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 OXSMQ9NWU1 459 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 SPO11Q9Y5K1 396 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 HDAC3O15379 428 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 KCNJ13O60928 360 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 ALDOAP04075 364 aaKnown RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 TIE1P35590 1138 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 MLLT1Q03111 559 aaPredicted RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 FCHO2Q0JRZ9 810 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 SF3A3Q12874 501 aaKnown RBP eCLIP8.29□□□□□ -1.08
USP54-215ENST00000497106 PPM1JQ5JR12 505 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 FAM109BQ6ICB4 259 aaPredicted RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 TET1Q8NFU7 2136 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 WFDC5Q8TCV5 224 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 DTX3LQ8TDB6 740 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 KIAA1191Q96A73 305 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 ALG14Q96F25 216 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 ZSWIM3Q96MP5 696 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 NELL2Q99435 816 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 NUSAP1Q9BXS6 441 aaKnown RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 TCF7L2Q9NQB0 619 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 HEY2Q9UBP5 337 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 MARCOQ9UEW3 520 aaPredicted RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 DHRS7Q9Y394 339 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 STX16-NPEPL1H3BU86 382 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 STX16O14662 325 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CHUKO15111 745 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 VEGFDO43915 354 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 MOSPD3O75425 235 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 SLC2A4P14672 509 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 HSD17B2P37059 387 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CTSOP43234 321 aaPredicted RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 NAGLUP54802 743 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 AP1S2P56377 157 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 THEMIS2Q5TEJ8 643 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 OR2A12Q8NGT7 310 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CEP70Q8NHQ1 597 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 LPGAT1Q92604 370 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 MYEOVQ96EZ4 313 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 SIPA1Q96FS4 1042 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 THOC1Q96FV9 657 aaKnown RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 RIOK2Q9BVS4 552 aaKnown RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 ARL15Q9NXU5 204 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 SIRPGQ9P1W8 387 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 EPS15L1Q9UBC2 864 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 GGT7Q9UJ14 662 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 PIAS3Q9Y6X2 628 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 PLXNA3P51805 1871 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 OR51F1A6NGY5 319 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 MYO1CO00159 1063 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CCL22O00626 93 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 LIN7AO14910 233 aaPredicted RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 GYG2O15488 501 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CDK14O94921 469 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 LMNAP02545 664 aaKnown RBP8.29□□□□□ -1.08
USP54-215ENST00000497106 ITGB6P18564 788 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CALB2P22676 271 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 AKT2P31751 481 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 SEC13P55735 322 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 OVGP1Q12889 678 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 METTL21CQ5VZV1 264 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 C16orf89Q6UX73 402 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 CLYBLQ8N0X4 340 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 PHF21BQ96EK2 531 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 HGH1Q9BTY7 390 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 HDAC8Q9BY41 377 aa8.29□□□□□ -1.08
USP54-215ENST00000497106 GPR89AB7ZAQ6 455 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PRKCGP05129 697 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PDHA1P08559 390 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 GPR89BP0CG08 455 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 THRAP10827 490 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 FOSL2P15408 326 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 HNMTP50135 292 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 THOP1P52888 689 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 RPS21P63220 83 aaKnown RBP8.28□□□□□ -1.08
USP54-215ENST00000497106 STX5Q13190 355 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 CST6Q15828 149 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 PFKFB4Q16877 469 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 CDKL4Q5MAI5 379 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 SPDYAQ5MJ70 313 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 SH2D4BQ5SQS7 431 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 MACC1Q6ZN28 852 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 MDGA1Q8NFP4 955 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 OR52K2Q8NGK3 314 aa8.28□□□□□ -1.08
USP54-215ENST00000497106 OR14C36Q8NHC7 312 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms