RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 MPSTP25325 297 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 ZNF75DP51815 510 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 NAP1L1P55209 391 aaKnown RBP12.59□□□□□ -0.39
PTPRF-214ENST00000496043 CFHR1Q03591 330 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 XRCC4Q13426 336 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 NFATC2Q13469 925 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 TGIF1Q15583 401 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 PPP2R5EQ16537 467 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 ZNF648Q5T619 568 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-214ENST00000496043 CCDC181Q5TID7 509 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 ZDHHC20Q5W0Z9 365 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 KDELC1Q6UW63 502 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 BBS12Q6ZW61 710 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 ZFAND4Q86XD8 727 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 PHYKPLQ8IUZ5 450 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 ZNF567Q8N184 647 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 SLC25A41Q8N5S1 370 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 AVL9Q8NBF6 648 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 CCDC112Q8NEF3 446 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 HAUS1Q96CS2 278 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 MRFAP1L1Q96HT8 127 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 PLEKHG4BQ96PX9 1271 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 FERMT1Q9BQL6 677 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 HEMGNQ9BXL5 484 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 BPIFA1Q9NP55 256 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.59□□□□□ -0.39
PTPRF-214ENST00000496043 PDP2Q9P2J9 529 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 PCDHA3Q9Y5H8 950 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 SPO11Q9Y5K1 396 aa12.59□□□□□ -0.39
PTPRF-214ENST00000496043 H7C0C1 242 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 APOC4-APOC2K7ER74 178 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 AURKAO14965 403 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 DUX1O43812 170 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 NDUFA10O95299 355 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 APOC2P02655 101 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 FGF3P11487 239 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-214ENST00000496043 ZNF7P17097 686 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-214ENST00000496043 HMGCLP35914 325 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 CETN2P41208 172 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 ATP5OP48047 213 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 MPP3Q13368 585 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 INSCQ1MX18 579 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 MANEAQ5SRI9 462 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 WDR74Q6RFH5 385 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-214ENST00000496043 PCSK4Q6UW60 755 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 IGSF10Q6WRI0 2623 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 LRRTM4Q86VH4 590 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 ZNF761Q86XN6 746 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-214ENST00000496043 DTX3LQ8TDB6 740 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 BRSK1Q8TDC3 778 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 NCSTNQ92542 709 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 KRT35Q92764 455 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 MRGPRX2Q96LB1 330 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 TTC25Q96NG3 672 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 VPS35Q96QK1 796 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 ZMYND15Q9H091 742 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 PRDM8Q9NQV8 689 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 HACD3Q9P035 362 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 FOXJ2Q9P0K8 574 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 CPNE7Q9UBL6 633 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 SLC23A2Q9UGH3 650 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 EFR3BQ9Y2G0 817 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 PCDHGA3Q9Y5H0 932 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 ADGRG1Q9Y653 693 aa12.58□□□□□ -0.4
PTPRF-214ENST00000496043 A6NCN8 305 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 SOWAHDA6NJG2 315 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 A8MU76 341 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 KCNJ13O60928 360 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 THRAP10827 490 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 XRCC1P18887 633 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-214ENST00000496043 HLA-DPA1P20036 260 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 RBL1P28749 1068 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 MARCKSL1P49006 195 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 EPHA4P54764 986 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 TMEM115Q12893 351 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-214ENST00000496043 GTF2H3Q13889 308 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 SLC1A5Q15758 541 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 ATP13A5Q4VNC0 1218 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 SIRPB2Q5JXA9 342 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 SNAP47Q5SQN1 464 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 CRTC3Q6UUV7 619 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 DTX1Q86Y01 620 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 TTC30BQ8N4P2 665 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 ZSCAN1Q8NBB4 408 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 GDAP1Q8TB36 358 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 TTC9Q92623 222 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 OXNAD1Q96HP4 312 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-214ENST00000496043 QKIQ96PU8 341 aaKnown RBP eCLIP12.57□□□□□ -0.4
PTPRF-214ENST00000496043 ASPSCR1Q9BZE9 553 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 RBSNQ9H1K0 784 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 OSGEPL1Q9H4B0 414 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 EPB41L1Q9H4G0 881 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 IL26Q9NPH9 171 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 SLC39A1Q9NY26 324 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 IL17CQ9P0M4 197 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 TMEM9Q9P0T7 183 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 RSPH14Q9UHP6 348 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 DUSP10Q9Y6W6 482 aa12.57□□□□□ -0.4
PTPRF-214ENST00000496043 CCDC66A2RUB6 948 aa12.56□□□□□ -0.4
PTPRF-214ENST00000496043 RCCD1A6NED2 376 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms