RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 TMEM63CQ9P1W3 806 aa9.03□□□□□ -0.96
HDAC3-212ENST00000492407 TBC1D29Q9UFV1 150 aa9.03□□□□□ -0.96
HDAC3-212ENST00000492407 LUC7L2Q9Y383 392 aaKnown RBP9.03□□□□□ -0.96
HDAC3-212ENST00000492407 ADGRG1Q9Y653 693 aa9.03□□□□□ -0.96
HDAC3-212ENST00000492407 MN1Q10571 1320 aaPredicted RBP9.03□□□□□ -0.96
HDAC3-212ENST00000492407 A0A087X0T9 212 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 CCDC189A1A4V9 331 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 CHUKO15111 745 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 POLR1CO15160 346 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-212ENST00000492407 INPP4BO15327 924 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 VEGFDO43915 354 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 C9P02748 559 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 CD48P09326 243 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 H2AFZP0C0S5 128 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 FAM228BP0C875 321 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 ZFXP17010 805 aaPredicted RBP9.02□□□□□ -0.97
HDAC3-212ENST00000492407 MPSTP25325 297 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 CASRP41180 1078 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 MAGEA8P43361 318 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 UBE2IP63279 158 aaKnown RBP9.02□□□□□ -0.97
HDAC3-212ENST00000492407 CYP4F2P78329 520 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 PPIDQ08752 370 aaKnown RBP9.02□□□□□ -0.97
HDAC3-212ENST00000492407 MMRN1Q13201 1228 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 IHHQ14623 411 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 QPCTQ16769 361 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 C4orf46Q504U0 113 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 H2AFVQ71UI9 128 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 MARK2Q7KZI7 788 aaKnown RBP9.02□□□□□ -0.97
HDAC3-212ENST00000492407 TMC3Q7Z5M5 1100 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 TRIM74Q86UV6 250 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 TRAM1L1Q8N609 369 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 LPCAT1Q8NF37 534 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 APOBEC4Q8WW27 367 aaKnown RBP9.02□□□□□ -0.97
HDAC3-212ENST00000492407 NCSTNQ92542 709 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 PMEPA1Q969W9 287 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 RNF157Q96PX1 679 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 TIMM29Q9BSF4 260 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 RAB33BQ9H082 229 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 ZFYVE1Q9HBF4 777 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.02□□□□□ -0.97
HDAC3-212ENST00000492407 TMEM9Q9P0T7 183 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 CPNE7Q9UBL6 633 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 NENFQ9UMX5 172 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 KCTD3Q9Y597 815 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 UNC13CQ8NB66 2214 aa9.02□□□□□ -0.97
HDAC3-212ENST00000492407 BOD1L1Q8NFC6 3051 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 TRBV23OR9-2A0A075B6M9 112 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 PRR19A6NJB7 356 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 FADS2P1A8MWK0 482 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 KMOO15229 486 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 STK17BO94768 372 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 MTA2O94776 668 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 EML2O95834 649 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 DLGAP3O95886 979 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 JCHAINP01591 159 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 MT-ND3P03897 115 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ATP1A1P05023 1023 aaKnown RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 HLA-DQB2P05538 268 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 MMP2P08253 660 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ACP5P13686 325 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 KDELR1P24390 212 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 CD86P42081 329 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 STAT5AP42229 794 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ARHGAP25P42331 645 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 GTF2A1P52655 376 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 UBASH3AP57075 661 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 SARNPP82979 210 aaKnown RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 FANCCQ00597 558 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 GBE1Q04446 702 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 NFATC2Q13469 925 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 PDK1Q15118 436 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 NFKBIBQ15653 356 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ZNF569Q5MCW4 686 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 LRRC38Q5VT99 294 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 AGAP9Q5VTM2 703 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ZDHHC20Q5W0Z9 365 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ABRAXAS1Q6UWZ7 409 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 TMEM26Q6ZUK4 368 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 BZW1Q7L1Q6 419 aaKnown RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 BPHLQ86WA6 291 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 PQLC3Q8N755 202 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 CCNYQ8ND76 341 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ACRBPQ8NEB7 543 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 BRSK1Q8TDC3 778 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 JPH3Q8WXH2 748 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 CTNNBL1Q8WYA6 563 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 TADA1Q96BN2 335 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 IMP4Q96G21 291 aaKnown RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 BTBD6Q96KE9 485 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 C9orf72Q96LT7 481 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 FCRL4Q96PJ5 515 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 PLEKHG4BQ96PX9 1271 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 VPS35Q96QK1 796 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 SLC25A51Q9H1U9 297 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 POT1Q9NUX5 634 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 CHCHD3Q9NX63 227 aaKnown RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 SIDT1Q9NXL6 827 aaKnown RBP9.01□□□□□ -0.97
HDAC3-212ENST00000492407 DTLQ9NZJ0 730 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 CTTNBP2NLQ9P2B4 639 aa9.01□□□□□ -0.97
HDAC3-212ENST00000492407 ATXN10Q9UBB4 475 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms