RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 POLD2P49005 469 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 HNRNPDQ14103 355 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 BOP1Q14137 746 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 GRB7Q14451 532 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 C9orf57Q5W0N0 161 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 TRIQKQ629K1 86 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 GPR180Q86V85 440 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 CFAP52Q8N1V2 620 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 C7orf57Q8NEG2 295 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 SPPL2BQ8TCT7 592 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 C17orf50Q8WW18 174 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 NSUN5Q96P11 429 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 OPTCQ9UBM4 332 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 MAGEL2Q9UJ55 1249 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 VPS4AQ9UN37 437 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 MYBPHLA2RUH7 354 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 CCT3P49368 545 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 SCNN1GP51170 649 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 CYP4F8P98187 520 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 SULT2A1Q06520 285 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 EPS8Q12929 822 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 NFATC3Q12968 1075 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 NPTX1Q15818 432 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 FAM174BQ3ZCQ3 159 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 OVOS1Q6IE37 1185 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 PGM2L1Q6PCE3 622 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 MAVSQ7Z434 540 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 TOP1MTQ969P6 601 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 BIRC7Q96CA5 298 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 PPP1R2P1Q96PQ5 205 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 SLC38A7Q9NVC3 462 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 SPATA7Q9P0W8 599 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 AASSQ9UDR5 926 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 GNPTGQ9UJJ9 305 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 MGAT4DA6NG13 374 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 BBIP1A8MTZ0 92 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 FAM25AB3EWG3 89 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 FAM25CB3EWG5 89 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 FAM25GB3EWG6 89 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 H3BMQ9 156 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 WBP4O75554 376 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 STAU1O95793 577 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 KRT6AP02538 564 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 KRT6BP04259 564 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 GTF2E2P29084 291 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 KRT6CP48668 564 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 ZNF132P52740 706 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 PHC1P78364 1004 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 HSPA14Q0VDF9 509 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 DDI2Q5TDH0 399 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 RAVER1Q8IY67 606 aaKnown RBP13.42□□□□□ -0.26
USP42-206ENST00000479544 SMARCD1Q96GM5 515 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 COG8Q96MW5 612 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 ASB2Q96Q27 587 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 BEX2Q9BXY8 128 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 RIMS3Q9UJD0 308 aa13.42□□□□□ -0.26
USP42-206ENST00000479544 SMIM28A0A1B0GU29 152 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 ANKRD33BA6NCL7 494 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 TCAF2A6NFQ2 919 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 AQP12BA6NM10 295 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 NPHS1O60500 1241 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 CELF2O95319 508 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 OXSR1O95747 527 aaPredicted RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 MYCLP1P12525 358 aaPredicted RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 TRAP1Q12931 704 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 TOP3AQ13472 1001 aaPredicted RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 VGLL4Q14135 290 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 AQP12AQ8IXF9 295 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 CMTR2Q8IYT2 770 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 TMEM132CQ8N3T6 1108 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 OR4K2Q8NGD2 314 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 MZB1Q8WU39 189 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 GFM1Q96RP9 751 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 GPR20Q99678 358 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 GPR22Q99680 433 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 AGO3Q9H9G7 860 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 HTR3EA5X5Y0 456 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 ZNF99A8MXY4 864 aaPredicted RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 GRID2O43424 1007 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 SLC26A3P40879 764 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 LHX1P48742 406 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 INO80DQ53TQ3 878 aaPredicted RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 GNASQ5JWF2 1037 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 NIPAL1Q6NVV3 410 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 CIR1Q86X95 450 aaPredicted RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 SLC15A3Q8IY34 581 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 ATP6V0D2Q8N8Y2 350 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 SMG8Q8ND04 991 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 STYXQ8WUJ0 223 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 NACC2Q96BF6 587 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 ROPN1LQ96C74 230 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 CD320Q9NPF0 282 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 SCUBE2Q9NQ36 999 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 MRPS7Q9Y2R9 242 aaKnown RBP13.41□□□□□ -0.26
USP42-206ENST00000479544 SMIM30A4D0T7 59 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 EFCAB9A8MZ26 197 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 ODC1P11926 461 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 INHBEP58166 350 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 HMGCS1Q01581 520 aa13.41□□□□□ -0.26
USP42-206ENST00000479544 ALDH6A1Q02252 535 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms