RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 B3GNT6Q6ZMB0 384 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 DBX2Q6ZNG2 339 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 TRAPPC11Q7Z392 1133 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 CENPVQ7Z7K6 275 aaPredicted RBP5.11□□□□□ -1.59
UPF3B-203ENST00000478840 PIP4P1Q86T03 277 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 CCDC190Q86UF4 302 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 PALB2Q86YC2 1186 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 RASGEF1CQ8N431 466 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 LRFN5Q96NI6 719 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 FNBP1Q96RU3 617 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 SMC6Q96SB8 1091 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 GFI1Q99684 422 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 EGFL8Q99944 293 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 MMTAG2Q9BU76 263 aaKnown RBP5.11□□□□□ -1.59
UPF3B-203ENST00000478840 RETREG1Q9H6L5 497 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 CNOT10Q9H9A5 744 aaKnown RBP5.11□□□□□ -1.59
UPF3B-203ENST00000478840 ADARB2Q9NS39 739 aaKnown RBP5.11□□□□□ -1.59
UPF3B-203ENST00000478840 TAS2R14Q9NYV8 317 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 IL36RNQ9UBH0 155 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 DNAJB9Q9UBS3 223 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 ZNHIT2Q9UHR6 403 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 COG5Q9UP83 839 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 COX11Q9Y6N1 276 aa5.11□□□□□ -1.59
UPF3B-203ENST00000478840 TRAV34A0A0B4J273 112 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 A0A1W2PPM1 405 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 I6L893 689 aaPredicted RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 IPO8O15397 1037 aaKnown RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 SPINT2O43291 252 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 PLPP2O43688 288 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 DDNO94850 711 aaPredicted RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 CELF2O95319 508 aaKnown RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 ATP6V1B1P15313 513 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 TCEA1P23193 301 aaKnown RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 SP100P23497 879 aaPredicted RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 TUBB2AQ13885 445 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 E2F5Q15329 346 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 SUPT20HL1Q3ZLR7 823 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 PLA2G4FQ68DD2 849 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 ADCK2Q7Z695 626 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 ZNF595Q8IYB9 648 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 AFAP1Q8N556 730 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 IQUBQ8NA54 791 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 RHBDF1Q96CC6 855 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 MGME1Q9BQP7 344 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 TUBB2BQ9BVA1 445 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 CATSPERBQ9H7T0 1116 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 COPS7BQ9H9Q2 264 aaPredicted RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 TRPV4Q9HBA0 871 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 CHMP1AQ9HD42 196 aaPredicted RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 CNGB3Q9NQW8 809 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 PRMT7Q9NVM4 692 aaPredicted RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 CHCHD3Q9NX63 227 aaKnown RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 TUBA8Q9NY65 449 aaPredicted RBP5.1□□□□□ -1.59
UPF3B-203ENST00000478840 CDC14AQ9UNH5 594 aa5.1□□□□□ -1.59
UPF3B-203ENST00000478840 GOLGA6L9A6NEM1 432 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 ANXA2P2A6NMY6 339 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 FAM90A26D6RGX4 464 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 ADAM10O14672 748 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 TIMM23O14925 209 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 KCNN4O15554 427 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 STX6O43752 255 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 DIAPH2O60879 1101 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 ZNF217O75362 1048 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 RBMXL2O75526 392 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 FGF2P09038 288 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 DANCRP0C864 163 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 CASTP20810 708 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 HRH2P25021 359 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 NMBRP28336 390 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 HNRNPH2P55795 449 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 SCN1BQ07699 218 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 FOXM1Q08050 763 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 GAGE2BQ13066 116 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 CTTNQ14247 550 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 TYSND1Q2T9J0 566 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 GAGE2EQ4V326 116 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 WASHC2DQ5SRD0 308 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 C6orf163Q5TEZ5 329 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 GAGE2AQ6NT46 116 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 DUS1LQ6P1R4 473 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 KCTD18Q6PI47 426 aaPredicted RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 Q6ZSV7 163 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 MSANTD1Q6ZTZ1 278 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 ZNF367Q7RTV3 350 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 PIWIL3Q7Z3Z3 882 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 YTHDF3Q7Z739 585 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 PRIMA1Q86XR5 153 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 CNGA4Q8IV77 575 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 DSELQ8IZU8 1212 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 CCAR2Q8N163 923 aaKnown RBP5.09□□□□□ -1.59
UPF3B-203ENST00000478840 GCSAMQ8N6F7 178 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 MSANTD4Q8NCY6 345 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 BBS10Q8TAM1 723 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 MR1Q95460 341 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 APOLD1Q96LR9 279 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 MS4A10Q96PG2 267 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 ISCUQ9H1K1 167 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 PCED1AQ9H1Q7 454 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 RAD21L1Q9H4I0 556 aa5.09□□□□□ -1.59
UPF3B-203ENST00000478840 C17orf75Q9HAS0 396 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms