RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ADAM20	O43506	726 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	AVIL	O75366	819 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	NGFR	P08138	427 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	ACAA1	P09110	424 aa	Predicted RBP	3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	LINC00271	P0C7V0	271 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	DAO	P14920	347 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	CDKN2A	P42771	156 aa	Known RBP	3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	HTR6	P50406	440 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	STAT2	P52630	851 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	CLDN20	P56880	219 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	DDR1	Q08345	913 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	KIF5A	Q12840	1032 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	DLG1	Q12959	904 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	TNFAIP1	Q13829	316 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	KRTCAP3	Q53RY4	240 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	GPR139	Q6DWJ6	353 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	FAM109B	Q6ICB4	259 aa	Predicted RBP	3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	TRNP1	Q6NT89	227 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	RGMB	Q6NW40	437 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	CCDC190	Q86UF4	302 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	DNAAF5	Q86Y56	855 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF34	Q8IZ26	560 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	RASGEF1C	Q8N431	466 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	GCSAM	Q8N6F7	178 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	SYT2	Q8N9I0	419 aa	Predicted RBP	3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	OR5R1	Q8NH85	324 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	PTPMT1	Q8WUK0	201 aa	Predicted RBP	3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	TMED6	Q8WW62	240 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	C3orf30	Q96M34	536 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	QRFPR	Q96P65	431 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	CSF3R	Q99062	836 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	MTERF1	Q99551	399 aa	Known RBP	3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	GFI1	Q99684	422 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	CMKLR1	Q99788	373 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	GAREM1	Q9H706	876 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	OCIAD1	Q9NX40	245 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF224	Q9NZL3	707 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	SELENON	Q9NZV5	590 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	SIX4	Q9UIU6	781 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	PCDHAC2	Q9Y5I4	1007 aa		3.77	□□□□□ -1.81
PTCD3-209	ENST00000472044	PTPRC	P08575	1304 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	LOC102723996	A0A087X1L8	192 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044		A0A1W2PP11	408 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF217	O75362	1048 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	KDM4B	O94953	1096 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	PMS2P2	O95744	297 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	NANOS2	P60321	138 aa	Known RBP	3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	PDE1B	Q01064	536 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	CALD1	Q05682	793 aa	Known RBP	3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	GRAP	Q13588	217 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	DLG2	Q15700	870 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	RAB6C	Q53S08	254 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	NAA16	Q6N069	864 aa	Predicted RBP	3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	AACS	Q86V21	672 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	GPR180	Q86V85	440 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	SPATA2L	Q8IUW3	424 aa	Predicted RBP	3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	CEP97	Q8IW35	865 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	SAMD14	Q8IZD0	417 aa	Predicted RBP	3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	C1orf87	Q8N0U7	546 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	MINDY1	Q8N5J2	469 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	EMC1	Q8N766	993 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	ACVR1C	Q8NER5	493 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	NEUROG1	Q92886	237 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	PAFAH2	Q99487	392 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	RAB6C	Q9H0N0	254 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	CD93	Q9NPY3	652 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	AMACR	Q9UHK6	382 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	KLHL20	Q9Y2M5	609 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	WBP11	Q9Y2W2	641 aa	Known RBP	3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	PRAG1	Q86YV5	1406 aa		3.76	□□□□□ -1.81
PTCD3-209	ENST00000472044	ASTN2	O75129	1339 aa	Predicted RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	PDS5A	Q29RF7	1337 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GPR75-ASB3	A0A0A6YYF3	556 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044		A8MV72	311 aa	Predicted RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	P4HA2	O15460	535 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	PLPP2	O43688	288 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	RSL1D1	O76021	490 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	KCNK5	O95279	499 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	TPO	P07202	933 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	NR2F2	P24468	414 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	HRH2	P25021	359 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	CORO1A	P31146	461 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	LMAN1	P49257	510 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ARSE	P51690	589 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	CTSC	P53634	463 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	DSCR9	P59020	149 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	SIRPA	P78324	504 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GAGE2B	Q13066	116 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GAGE2E	Q4V326	116 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	BMP2KL	Q5H9B9	411 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	DHRS7B	Q6IAN0	325 aa	Predicted RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	GAGE2A	Q6NT46	116 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	TMCO3	Q6UWJ1	677 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	CREB3L2	Q70SY1	520 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZNF534	Q76KX8	674 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	RBM23	Q86U06	439 aa	Known RBP	3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ZDHHC17	Q8IUH5	632 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	ADHFE1	Q8IWW8	467 aa		3.75	□□□□□ -1.81
PTCD3-209	ENST00000472044	PM20D2	Q8IYS1	436 aa		3.75	□□□□□ -1.81

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