RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TTPAP49638 278 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 RETSATQ6NUM9 610 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 MBOAT1Q6ZNC8 495 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 RNF145Q96MT1 663 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 CCL16O15467 120 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 RNASEH2AO75792 299 aaKnown RBP11.88□□□□□ -0.51
SMPD4-213ENST00000454468 OR6B1O95007 311 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 PARNO95453 639 aaKnown RBP11.88□□□□□ -0.51
SMPD4-213ENST00000454468 ATXN8OSP0DMR3 200 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 ZNF23P17027 643 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 EFNA1P20827 205 aaPredicted RBP11.88□□□□□ -0.51
SMPD4-213ENST00000454468 HOXD9P28356 352 aaPredicted RBP11.88□□□□□ -0.51
SMPD4-213ENST00000454468 MAGEA11P43364 429 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 RGS4P49798 205 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 APLP1P51693 650 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 DGKQP52824 942 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 RPL38P63173 70 aaKnown RBP11.88□□□□□ -0.51
SMPD4-213ENST00000454468 HMGCS1Q01581 520 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 COL9A2Q14055 689 aaPredicted RBP11.88□□□□□ -0.51
SMPD4-213ENST00000454468 TRIM60Q495X7 471 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 SMYD5Q6GMV2 418 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 GPRIN3Q6ZVF9 776 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 SATL1Q86VE3 508 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 SERPINA9Q86WD7 417 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 FAM126BQ8IXS8 530 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 TMEM151AQ8N4L1 468 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 OR56A4Q8NGH8 313 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 KLHL32Q96NJ5 620 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 COQ10BQ9H8M1 238 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 ACTR8Q9H981 624 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 ZFYVE1Q9HBF4 777 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 MRPL17Q9NRX2 175 aaKnown RBP11.88□□□□□ -0.51
SMPD4-213ENST00000454468 GID8Q9NWU2 228 aa11.88□□□□□ -0.51
SMPD4-213ENST00000454468 KRT87PA6NCN2 255 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 UFM1P61960 85 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 TRIM25Q14258 630 aaKnown RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 SAMD4BQ5PRF9 694 aaKnown RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 RNF111Q6ZNA4 994 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 DDX53Q86TM3 631 aaKnown RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 PHC3Q8NDX5 983 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 ZNF461Q8TAF7 563 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 FIG4Q92562 907 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 PRICKLE1Q96MT3 831 aaPredicted RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 ANKRD27Q96NW4 1050 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 PSKH2Q96QS6 385 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 CCT7Q99832 543 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 KCTD14Q9BQ13 255 aaPredicted RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 NSUN3Q9H649 340 aaKnown RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 VPS51Q9UID3 782 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 SEC22BO75396 215 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 CLIC3O95833 236 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 CYBBP04839 570 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 GSNP06396 782 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 ZNF7P17097 686 aaPredicted RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 LCP2Q13094 533 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 OR10Q1Q8NGQ4 319 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 MYO19Q96H55 970 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 PDP2Q9P2J9 529 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 POLR3HQ9Y535 204 aaPredicted RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 UPK3BL1B0FP48 263 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 UPK3BL2E5RIL1 263 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 PRMT5O14744 637 aaPredicted RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 IRF5Q13568 498 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 CBX2Q14781 532 aaPredicted RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 ARHGEF6Q15052 776 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 NKAPQ8N5F7 415 aaKnown RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 IGSF21Q96ID5 467 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 CLSTN3Q9BQT9 956 aa11.87□□□□□ -0.51
SMPD4-213ENST00000454468 C2orf49Q9BVC5 232 aaPredicted RBP11.87□□□□□ -0.51
SMPD4-213ENST00000454468 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.86□□□□□ -0.51
SMPD4-213ENST00000454468 ARHGAP10A1A4S6 786 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 NEDD8-MDP1E9PL57 170 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 INPPL1O15357 1258 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 CHN2P52757 468 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 TAF1AQ15573 450 aaPredicted RBP11.86□□□□□ -0.51
SMPD4-213ENST00000454468 ZNF423Q2M1K9 1284 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 SLC44A4Q53GD3 710 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 CCSAPQ6IQ19 270 aaPredicted RBP11.86□□□□□ -0.51
SMPD4-213ENST00000454468 PDSS2Q86YH6 399 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 CNTN4Q8IWV2 1026 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 WFDC5Q8TCV5 224 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 SLC22A17Q8WUG5 538 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 ZBTB18Q99592 522 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 IPPKQ9H8X2 491 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 ABCB8Q9NUT2 735 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 RIC8BQ9NVN3 520 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 ARL15Q9NXU5 204 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 E2F6O75461 281 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 PSMA4P25789 261 aaKnown RBP11.86□□□□□ -0.51
SMPD4-213ENST00000454468 RPL10P27635 214 aaKnown RBP11.86□□□□□ -0.51
SMPD4-213ENST00000454468 HOXC13P31276 330 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 MTPNP58546 118 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 INPP5AQ14642 412 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 PGS1Q32NB8 556 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 RBM23Q86U06 439 aaKnown RBP11.86□□□□□ -0.51
SMPD4-213ENST00000454468 ELMOD1Q8N336 334 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 FBXO30Q8TB52 745 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 TDRD1Q9BXT4 1180 aaKnown RBP11.86□□□□□ -0.51
SMPD4-213ENST00000454468 ATG10Q9H0Y0 220 aa11.86□□□□□ -0.51
SMPD4-213ENST00000454468 POLG2Q9UHN1 485 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms