RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CCL27Q9Y4X3 112 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 TRPV2Q9Y5S1 764 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 CEMIPQ8WUJ3 1361 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 PXDNLA1KZ92 1463 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 USP54Q70EL1 1684 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 MARF1Q9Y4F3 1742 aaKnown RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 FAM208AQ9UK61 1670 aaKnown RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 A0A0A0MQY5 61 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 SLC22A23A1A5C7 686 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 A8MXE2 369 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 LACTBL1A8MY62 500 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ZNF814B7Z6K7 855 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 NPIPB11E5RHQ5 1161 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 TPPPO94811 219 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 BAG4O95429 457 aaKnown RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 MT-CYBP00156 380 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 SRPRAP08240 638 aaKnown RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 CD63P08962 238 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 HOXB5P09067 269 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 MYBL1P10243 752 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 PCNAP12004 261 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ITGAXP20702 1163 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 CHMLP26374 656 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 YWHAQP27348 245 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 HOXA7P31268 230 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 HOXA13P31271 388 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 ZNF41P51814 821 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 CLDN2P57739 230 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 NUCB2P80303 420 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 MRPS5P82675 430 aaKnown RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 TFCP2Q12800 502 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 C15orf59Q2T9L4 293 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 ASTE1Q2TB18 679 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 KRT80Q6KB66 452 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 CLEC17AQ6ZS10 378 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 CYB5R4Q7L1T6 521 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 IGFN1Q86VF2 1251 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 IQCA1Q86XH1 822 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 UNC5CLQ8IV45 518 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 CEP97Q8IW35 865 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 DCP1BQ8IZD4 617 aaKnown RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 CADM3Q8N126 398 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 OR8H3Q8N146 312 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ARL14EPQ8N8R7 260 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 ZBTB8BQ8NAP8 495 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 OR6J1Q8NGC5 347 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 HDAC7Q8WUI4 952 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ZFPM2Q8WW38 1151 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 RMDN1Q96DB5 314 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ARHGEF26Q96DR7 871 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ELMOD3Q96FG2 381 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ZNF479Q96JC4 524 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 JAKMIP1Q96N16 626 aaKnown RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 OR2A14Q96R47 310 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 DESI2Q9BSY9 194 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 VPS33BQ9H267 617 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 HRH4Q9H3N8 390 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 PLK3Q9H4B4 646 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ZNF304Q9HCX3 659 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 DECR2Q9NUI1 292 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 ABCF3Q9NUQ8 709 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 DBF4Q9UBU7 674 aaPredicted RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 GTF3C4Q9UKN8 822 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 LSM4Q9Y4Z0 139 aaKnown RBP4.2□□□□□ -1.74
VPS29-202ENST00000447578 SLIT3O75094 1523 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 NCAPD2Q15021 1401 aa4.2□□□□□ -1.74
VPS29-202ENST00000447578 MED1Q15648 1581 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 PXDNQ92626 1479 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ADCY9O60503 1353 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 LOC100509620A0A075B734 347 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 TMEM272A0A1B0GTI8 110 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 DDTLA6NHG4 134 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 CBY3A6NI87 242 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ADAMDEC1O15204 470 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 HCRTR2O43614 444 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 EPN2O95208 641 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ABCB1P08183 1280 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 ZNF182P17025 639 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 THPOP40225 353 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 GRIK3Q13003 919 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 BAATQ14032 418 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 ASIC2Q16515 512 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ODF3L2Q3SX64 289 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 SYTL3Q4VX76 610 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 CXorf66Q5JRM2 361 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 CES5AQ6NT32 575 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 SHQ1Q6PI26 577 aaKnown RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 MFSD6Q6ZSS7 791 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 C18orf65Q6ZTR6 163 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 FAM57BQ71RH2 274 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 PLPPR4Q7Z2D5 763 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 CCDC25Q86WR0 208 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ADHFE1Q8IWW8 467 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ZNF713Q8N859 430 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 OR4N2Q8NGD1 307 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 AFAP1L1Q8TED9 768 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 KAT2AQ92830 837 aa4.19□□□□□ -1.74
VPS29-202ENST00000447578 ATOH1Q92858 354 aaPredicted RBP4.19□□□□□ -1.74
VPS29-202ENST00000447578 TMCO6Q96DC7 493 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms