RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PANX2Q96RD6 677 aa20.5■□□□□ 0.87
SDC1-205ENST00000447124 SARS2Q9NP81 518 aaKnown RBP20.5■□□□□ 0.87
SDC1-205ENST00000447124 RAD18Q9NS91 495 aa20.5■□□□□ 0.87
SDC1-205ENST00000447124 SCHIP1Q9P0W5 487 aaPredicted RBP20.5■□□□□ 0.87
SDC1-205ENST00000447124 KLHL8Q9P2G9 620 aaPredicted RBP20.5■□□□□ 0.87
SDC1-205ENST00000447124 ERVH48-1M5A8F1 160 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 HGSO14964 777 aaPredicted RBP20.49■□□□□ 0.87
SDC1-205ENST00000447124 NDUFA10O95299 355 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 THRAP10827 490 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 CA5AP35218 305 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 CLCNKAP51800 687 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 HHEXQ03014 270 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 NFATC2Q13469 925 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 TRA2AQ13595 282 aaKnown RBP eCLIP20.49■□□□□ 0.87
SDC1-205ENST00000447124 PPP2R5EQ16537 467 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 SIRPB2Q5JXA9 342 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 PDPK2PQ6A1A2 396 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 RAD9BQ6WBX8 426 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 DAAM2Q86T65 1068 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 DTX1Q86Y01 620 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 CCDC50Q8IVM0 306 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 ZNF547Q8IVP9 402 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 SLC25A41Q8N5S1 370 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 MRFAP1L1Q96HT8 127 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 QKIQ96PU8 341 aaKnown RBP eCLIP20.49■□□□□ 0.87
SDC1-205ENST00000447124 KLC4Q9NSK0 619 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 WDR70Q9NW82 654 aa20.49■□□□□ 0.87
SDC1-205ENST00000447124 PRR19A6NJB7 356 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 MTSS1O43312 755 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 LIPCP11150 499 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 F3P13726 295 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 RBL1P28749 1068 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 HMGCLP35914 325 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 GPLD1P80108 840 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 ATP13A5Q4VNC0 1218 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 CRTC3Q6UUV7 619 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 GAS2L3Q86XJ1 694 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 RBM41Q96IZ5 413 aaKnown RBP20.48■□□□□ 0.87
SDC1-205ENST00000447124 PLEKHG4BQ96PX9 1271 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 SRPK1Q96SB4 655 aaKnown RBP20.48■□□□□ 0.87
SDC1-205ENST00000447124 VAT1Q99536 393 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 B3GNT4Q9C0J1 378 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 LACRTQ9GZZ8 138 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 IL26Q9NPH9 171 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 OCIAD1Q9NX40 245 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 AKAP7Q9P0M2 348 aaPredicted RBP20.48■□□□□ 0.87
SDC1-205ENST00000447124 IL17CQ9P0M4 197 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 PCDHA3Q9Y5H8 950 aa20.48■□□□□ 0.87
SDC1-205ENST00000447124 CFAP46Q8IYW2 2715 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 HACD1B0YJ81 288 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 UBE2IP63279 158 aaKnown RBP20.47■□□□□ 0.87
SDC1-205ENST00000447124 XRCC4Q13426 336 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 TAF1BQ53T94 588 aaPredicted RBP20.47■□□□□ 0.87
SDC1-205ENST00000447124 SLC9B2Q86UD5 537 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 TMTC1Q8IUR5 882 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 OR10G6Q8NH81 332 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 WBP1Q96G27 269 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 AHCYL2Q96HN2 611 aaKnown RBP20.47■□□□□ 0.87
SDC1-205ENST00000447124 TAAR9Q96RI9 348 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 DPYSL5Q9BPU6 564 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 GORASP1Q9BQQ3 440 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 SEMA4CQ9C0C4 833 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 CPNE7Q9UBL6 633 aa20.47■□□□□ 0.87
SDC1-205ENST00000447124 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.47■□□□□ 0.87
SDC1-205ENST00000447124 KIR2DS5A0A0G2JLQ3 304 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 A0A0G2JNG1 304 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 GPR89AB7ZAQ6 455 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 APOC4-APOC2K7ER74 178 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 KIR2DS3K7RE56 304 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 BUD23O43709 281 aaKnown RBP20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A9O60656 530 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 CDK14O94921 469 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 APOC2P02655 101 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 GPR89BP0CG08 455 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 ZNF7P17097 686 aaPredicted RBP20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A6P19224 532 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 WT1P19544 449 aaPredicted RBP20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A1P22309 533 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A4P22310 534 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 CTNNA1P35221 906 aaKnown RBP20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A3P35503 534 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 SLC19A1P41440 591 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 C19orf57Q0VDD7 668 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 KIR2DS5Q14953 304 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 SLC1A5Q15758 541 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 PLA2G4EQ3MJ16 856 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 AADACL2Q6P093 401 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 ARHGAP22Q7Z5H3 698 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 ZNF843Q8N446 348 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 AGBL5Q8NDL9 886 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 IPMKQ8NFU5 416 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 VPS35Q96QK1 796 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 TBC1D10AQ9BXI6 508 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 TRABDQ9H4I3 376 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A7Q9HAW7 530 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A10Q9HAW8 530 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 UGT1A8Q9HAW9 530 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 ZNF624Q9P2J8 865 aaPredicted RBP20.46■□□□□ 0.87
SDC1-205ENST00000447124 TRHDEQ9UKU6 1024 aa20.46■□□□□ 0.87
SDC1-205ENST00000447124 PCDHGA3Q9Y5H0 932 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms