RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 SPO11Q9Y5K1 396 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 TRIM24O15164 1050 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 STAMBPO95630 424 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 SMIM18P0DKX4 95 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 EEF1DP29692 281 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 SOX11P35716 441 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 SLC26A3P40879 764 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 RGRP47804 291 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 STC1P52823 247 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 RPL26P61254 145 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 ECT2LQ008S8 904 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 GALNT1Q10472 559 aaPredicted RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 CAPRIN1Q14444 709 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 MTX3Q5HYI7 312 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 SAMD4BQ5PRF9 694 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 PAQR3Q6TCH7 311 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 RETREG3Q86VR2 466 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 DENND1CQ8IV53 801 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 FUNDC1Q8IVP5 155 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 ARL14EPQ8N8R7 260 aaPredicted RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 OR4K2Q8NGD2 314 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 SP7Q8TDD2 431 aaPredicted RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 TADA1Q96BN2 335 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 NMD3Q96D46 503 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 CDKN2AIPNLQ96HQ2 116 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 PRPF18Q99633 342 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 CINPQ9BW66 212 aaPredicted RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 TTLL2Q9BWV7 592 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 GRIP2Q9C0E4 1043 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 COQ10BQ9H8M1 238 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 MRGBPQ9NV56 204 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 TSR3Q9UJK0 312 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 DOCK4Q8N1I0 1966 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 A0A1B0GTL3 188 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 A0A1W2PRU2 124 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 CLASP2O75122 1294 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 NDUFS3O75489 264 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 NDST3O95803 873 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 CLPTM1O96005 669 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 NELFEP18615 380 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 SLC6A4P31645 630 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 GRIA3P42263 894 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 MAPKAPK2P49137 400 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 YBEYP58557 167 aaPredicted RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 CAMK1Q14012 370 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 CYTH1Q15438 398 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 TSNQ15631 228 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 UGT3A2Q3SY77 523 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 GLT6D1Q7Z4J2 308 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 BBS5Q8N3I7 341 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 EFHBQ8N7U6 833 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 LPCAT1Q8NF37 534 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 NAT14Q8WUY8 206 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 AARSD1Q9BTE6 412 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 TRIM8Q9BZR9 551 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 NOL11Q9H8H0 719 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 AURKCQ9UQB9 309 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 YBX2Q9Y2T7 364 aaKnown RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 TIMM22Q9Y584 194 aa10.6□□□□□ -0.71
CUX1-205ENST00000425244 ZFP37Q9Y6Q3 630 aaPredicted RBP10.6□□□□□ -0.71
CUX1-205ENST00000425244 PLXNA3P51805 1871 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 PRRC2BQ5JSZ5 2229 aaKnown RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 GBF1Q92538 1859 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 A0A0U1RQS6 177 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 ANGPT2O15123 496 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 TIPRLO75663 272 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 ZDHHC11BP0C7U3 371 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 PABPC4LP0CB38 370 aaKnown RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 MBL2P11226 248 aaPredicted RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 MTHFD2P13995 350 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 HGFP14210 728 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 EPCAMP16422 314 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CHRM3P20309 590 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 GPX3P22352 226 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CDKN1CP49918 316 aaPredicted RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 MYBPC1Q00872 1141 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 RHDQ02161 417 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 GNA12Q03113 381 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 LRRC23Q53EV4 343 aaPredicted RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 C6orf10Q5SRN2 563 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 SCIMPQ6UWF3 145 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 DHFR2Q86XF0 187 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 TICAM1Q8IUC6 712 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 TMEM126BQ8IUX1 230 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 MIER2Q8N344 545 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 FBXO39Q8N4B4 442 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 PCYOX1LQ8NBM8 494 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 ZFAND2BQ8WV99 257 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 PBXIP1Q96AQ6 731 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CIB1Q99828 191 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 EGFL7Q9UHF1 273 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 IKZF3Q9UKT9 509 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 ANKRD12Q6UB98 2062 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 VCANP13611 3396 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CARNS1A5YM72 827 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 NPEPPSL1A6NEC2 478 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CBX4O00257 560 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CDC7O00311 574 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 NRG2O14511 850 aaPredicted RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 AKAP10O43572 662 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms