RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LAPTM5Q13571 262 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 CCL14Q16627 93 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 TAZQ16635 292 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PLA2G4EQ3MJ16 856 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 TAF2Q6P1X5 1199 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PGM2L1Q6PCE3 622 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 C16orf59Q7L2K0 433 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 Q8N9G6 341 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 STYXQ8WUJ0 223 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PRICKLE1Q96MT3 831 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ELOVL6Q9H5J4 265 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 RIC8BQ9NVN3 520 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 TAS2R13Q9NYV9 303 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 BRWD3Q6RI45 1802 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 I3L521 148 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 B4GAT1O43505 415 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 KRT6AP02538 564 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 KRT6BP04259 564 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PROZP22891 400 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PRDX6P30041 224 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 CPT1AP50416 773 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PRKAA2P54646 552 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SEMG2Q02383 582 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ARHGEF7Q14155 803 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SIM2Q14190 667 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ZNF267Q14586 743 aaPredicted RBP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 LAPTM4AQ15012 233 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 DGUOKQ16854 277 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 TMEM135Q86UB9 458 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 CCDC28AQ8IWP9 274 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ATAD1Q8NBU5 361 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 RDH11Q8TC12 318 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 TMEM174Q8WUU8 243 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SMOQ99835 787 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 LOC100506127A0A0U1RQW1 187 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 C7orf72A4D263 438 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 H0Y858 1186 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SOCS2O14508 198 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SERPINF2P08697 491 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 ALOX5P09917 674 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 GRB7Q14451 532 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 SZRD1Q7Z422 152 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 RTP4Q96DX8 246 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 LRCH3Q96II8 777 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 PRKD2Q9BZL6 878 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 WWOXQ9NZC7 414 aa11.86□□□□□ -0.51
HMGB1-206ENST00000405805 A0A0U1RQS6 177 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 NPEPPSL1A6NEC2 478 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 TCAF2A6NFQ2 919 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CLDN25C9JDP6 229 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 H3BNX3 289 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 GPR182O15218 404 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 TBX1O43435 398 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CLASP2O75122 1294 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 LRATO95237 230 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 PRSS56P0CW18 603 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 EFNA1P20827 205 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 TUBB3Q13509 450 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SEMA3AQ14563 771 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CMPK2Q5EBM0 449 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CENPLQ8N0S6 344 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 METTL25Q8N6Q8 603 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CINPQ9BW66 212 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CRTAC1Q9NQ79 661 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 EIF2B3Q9NR50 452 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 MRPL39Q9NYK5 338 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 RCOR3Q9P2K3 495 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 EVLQ9UI08 416 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SLC8A2Q9UPR5 921 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 LTBP3Q9NS15 1303 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 ZNF831Q5JPB2 1677 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 A0A1W2PQ67 120 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 A0A1W2PQH9 124 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SOCS7O14512 581 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 TRIM24O15164 1050 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CD3EAPO15446 510 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 VPS26AO75436 327 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SLC5A2P31639 672 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 GRK4P32298 578 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 DPP6P42658 865 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CLCN5P51795 746 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 DGKQP52824 942 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CDC42EP1Q00587 391 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 MERTKQ12866 999 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SMUG1Q53HV7 270 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 GLYATQ6IB77 296 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 GLT6D1Q7Z4J2 308 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CRYBG2Q8N1P7 616 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 MARVELD2Q8N4S9 558 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 KDM1BQ8NB78 822 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 OR8H1Q8NGG4 311 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SPPL2BQ8TCT7 592 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 FAR1Q8WVX9 515 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 KBTBD7Q8WVZ9 684 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 TMEM40Q8WWA1 233 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 MAELQ96JY0 434 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 OLFM1Q99784 485 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 EPB41L1Q9H4G0 881 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 PRDM5Q9NQX1 630 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms