RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MARCH9Q86YJ5 346 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 SDR16C5Q8N3Y7 309 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 GRK7Q8WTQ7 553 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 STYXQ8WUJ0 223 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 PATE1Q8WXA2 126 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 SCG3Q8WXD2 468 aaKnown RBP13.21□□□□□ -0.29
VPS28-202ENST00000377348 ADAMTS14Q8WXS8 1223 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 CPT1BQ92523 772 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 CCDC97Q96F63 343 aaPredicted RBP13.21□□□□□ -0.29
VPS28-202ENST00000377348 CDKN2AIPNLQ96HQ2 116 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 C16orf45Q96MC5 204 aaPredicted RBP13.21□□□□□ -0.29
VPS28-202ENST00000377348 ZNF778Q96MU6 729 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 DPEP2Q9H4A9 486 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 SMOXQ9NWM0 555 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 KCNK6Q9Y257 313 aa13.21□□□□□ -0.29
VPS28-202ENST00000377348 HEATR9A2RTY3 570 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 OR51F1A6NGY5 319 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 CHUKO15111 745 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 CASC3O15234 703 aaKnown RBP13.2□□□□□ -0.3
VPS28-202ENST00000377348 NOBOXO60393 691 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 EML2O95834 649 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 PTGIRP43119 386 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 CTSCP53634 463 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 PPP1R7Q15435 360 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 ZRANB3Q5FWF4 1079 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 PERM1Q5SV97 790 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 LDLRAP1Q5SW96 308 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 OGFOD3Q6PK18 319 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 RAB44Q7Z6P3 723 aaPredicted RBP13.2□□□□□ -0.3
VPS28-202ENST00000377348 ZNF547Q8IVP9 402 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 ARL10Q8N8L6 244 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 RASGEF1AQ8N9B8 481 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 DDHD1Q8NEL9 900 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 GPR156Q8NFN8 814 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 OR13J1Q8NGT2 312 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 IFI44Q8TCB0 444 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 RANBP9Q96S59 729 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 RMI1Q9H9A7 625 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 SLC23A2Q9UGH3 650 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 CRLS1Q9UJA2 301 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 PADI4Q9UM07 663 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 WASF3Q9UPY6 502 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 TCAF1Q9Y4C2 921 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 PCDHGA1Q9Y5H4 931 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 SLC30A1Q9Y6M5 507 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 AKAP13Q12802 2813 aa13.2□□□□□ -0.3
VPS28-202ENST00000377348 ZNF106Q9H2Y7 1883 aaKnown RBP13.19□□□□□ -0.3
VPS28-202ENST00000377348 GOLGA8MH3BSY2 632 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 H7C0S8 307 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 VEGFDO43915 354 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 AVILO75366 819 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 TRIM16O95361 564 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 MSH3P20585 1137 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 ITGALP20701 1170 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 ADRA1DP25100 572 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 MGAT1P26572 445 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 PAFAH1B1P43034 410 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 MAGEA6P43360 314 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 DUSP3P51452 185 aaPredicted RBP13.19□□□□□ -0.3
VPS28-202ENST00000377348 MAZP56270 477 aaKnown RBP13.19□□□□□ -0.3
VPS28-202ENST00000377348 LRP8Q14114 963 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 SKIDA1Q1XH10 827 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 TSTD2Q5T7W7 516 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 LRRC8BQ6P9F7 803 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 DET1Q7L5Y6 550 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 SNX20Q7Z614 316 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 LRRTM4Q86VH4 590 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 TRAPPC5Q8IUR0 188 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 PPHLN1Q8NEY8 458 aaKnown RBP13.19□□□□□ -0.3
VPS28-202ENST00000377348 ZDHHC1Q8WTX9 485 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 GLMNQ92990 594 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 HDAC10Q969S8 669 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 TTC25Q96NG3 672 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 SCNM1Q9BWG6 230 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 CHRAC1Q9NRG0 131 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 KLC4Q9NSK0 619 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 SYBUQ9NX95 663 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 PCYOX1Q9UHG3 505 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 RABGEF1Q9UJ41 708 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 KLK13Q9UKR3 277 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 DNAJC16Q9Y2G8 782 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 PLXNB3Q9ULL4 1909 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 CHD8Q9HCK8 2581 aa13.19□□□□□ -0.3
VPS28-202ENST00000377348 TRBV23OR9-2A0A075B6M9 112 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 CCDC162PA2VCL2 907 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 EME2A4GXA9 379 aaPredicted RBP13.18□□□□□ -0.3
VPS28-202ENST00000377348 FAM149AA5PLN7 773 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 OR2AG2A6NM03 316 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 AGAP14A8MT82 685 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 GPR89AB7ZAQ6 455 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 SNX2O60749 519 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 GPR89BP0CG08 455 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 ZNF7P17097 686 aaPredicted RBP13.18□□□□□ -0.3
VPS28-202ENST00000377348 PSMA3P25788 255 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 AKT1P31749 480 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 RPIAP49247 311 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 MRPS25P82663 173 aaKnown RBP13.18□□□□□ -0.3
VPS28-202ENST00000377348 CDK16Q00536 496 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 B4GALNT1Q00973 533 aa13.18□□□□□ -0.3
VPS28-202ENST00000377348 PTK6Q13882 451 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms