RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 NAXEQ8NCW5 288 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 TWIST2Q8WVJ9 160 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 HSFY1Q96LI6 401 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 SLC39A8Q9C0K1 460 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 KIAA1522Q9P206 1035 aaPredicted RBP13.63□□□□□ -0.23
COL4A1-201ENST00000375820 H3BM21 787 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 ADH1CP00326 375 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 HOXB8P17481 243 aaPredicted RBP13.63□□□□□ -0.23
COL4A1-201ENST00000375820 DCLRE1AQ6PJP8 1040 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 PYROXD2Q8N2H3 581 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 SPOCK2Q92563 424 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 HTATIP2Q9BUP3 242 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 OSBPL11Q9BXB4 747 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 KCNN2Q9H2S1 579 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 LRTM1Q9HBL6 345 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 SIRPGQ9P1W8 387 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 RAI2Q9Y5P3 530 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 ZFP37Q9Y6Q3 630 aaPredicted RBP13.63□□□□□ -0.23
COL4A1-201ENST00000375820 GLUD1P00367 558 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 RPL3P39023 403 aaKnown RBP13.63□□□□□ -0.23
COL4A1-201ENST00000375820 SP3Q02447 781 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 PCBP2Q15366 365 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL4A1-201ENST00000375820 UBAP2Q5T6F2 1119 aaKnown RBP13.63□□□□□ -0.23
COL4A1-201ENST00000375820 BEND5Q7L4P6 421 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 CRYBG2Q8N1P7 616 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 CKLFQ9UBR5 152 aa13.63□□□□□ -0.23
COL4A1-201ENST00000375820 CDC42BPAQ5VT25 1732 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 SEPT4O43236 478 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 CDH3P22223 829 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 AHCYP23526 432 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 FASTKD3Q14CZ7 662 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 GALNT18Q6P9A2 607 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 VSIG10LQ86VR7 867 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 ZNF615Q8N8J6 731 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 SNX33Q8WV41 574 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 A0A0X1KG70 313 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 OR1F1O43749 312 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 VIPP01282 170 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 SP140Q13342 867 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 OGFOD2Q6N063 350 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 PIWIL4Q7Z3Z4 852 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 AADATQ8N5Z0 425 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 SIDT2Q8NBJ9 832 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 FAM156AQ8NDB6 213 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 POF1BQ8WVV4 589 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 GAL3ST3Q96A11 431 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 TRNAU1APQ9NX07 287 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 TESMINQ9Y4I5 508 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 STATHP02808 62 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 RPL10LQ96L21 214 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 DPEP2Q9H4A9 486 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 DPEP3Q9H4B8 488 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 TBC1D17Q9HA65 648 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 NCANO14594 1321 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 QSOX1O00391 747 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 BCKDKO14874 412 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 CSN2P05814 226 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 CYP2C18P33260 490 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 ARF3P61204 181 aaPredicted RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 TXNL4AP83876 142 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 ARF1P84077 181 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 SH3RF1Q7Z6J0 888 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 SLC4A11Q8NBS3 891 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 CLP1Q92989 425 aaKnown RBP13.62□□□□□ -0.23
COL4A1-201ENST00000375820 DIRAS2Q96HU8 199 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 CHCHD6Q9BRQ6 235 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 TLE6Q9H808 572 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 FAM86C2PA6NEL3 165 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 CCNDBP1O95273 360 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 FOXM1Q08050 763 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 ZNF280BQ86YH2 543 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 OR2L3Q8NG85 312 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 TRPM4Q8TD43 1214 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 ANKRD27Q96NW4 1050 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 LRRC19Q9H756 370 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 LRRC4CQ9HCJ2 640 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 ETAA1Q9NY74 926 aa13.62□□□□□ -0.23
COL4A1-201ENST00000375820 NCOA3Q9Y6Q9 1424 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 A0A0G2JN53 185 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 METTL18O95568 372 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CD48P09326 243 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 MAN2A2P49641 1150 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 DUPD1Q68J44 220 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 REP15Q6BDI9 236 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 ARCQ7LC44 396 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PHF13Q86YI8 300 aaPredicted RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PHF12Q96QT6 1004 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PCDHGC4Q9Y5F7 938 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 REREQ9P2R6 1566 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 TNFRSF11BO00300 401 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 GRM6O15303 877 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 CDK14O94921 469 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PRKCHP24723 683 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 AP2S1P53680 142 aaPredicted RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 RAB25P57735 213 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 ITGA7Q13683 1181 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 TEFMQ96QE5 360 aaKnown RBP13.61□□□□□ -0.23
COL4A1-201ENST00000375820 PCDHB18PQ96TA0 734 aa13.61□□□□□ -0.23
COL4A1-201ENST00000375820 AIF1LQ9BQI0 150 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms