RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 MTF2Q9Y483 593 aaPredicted RBP8.65□□□□□ -1.02
SNRNP40-202ENST00000373720 PCDHB9Q9Y5E1 797 aa8.65□□□□□ -1.02
SNRNP40-202ENST00000373720 NUMBLQ9Y6R0 609 aa8.65□□□□□ -1.02
SNRNP40-202ENST00000373720 GLYATL1P3A0A0U1RQE8 302 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 UBA6A0AVT1 1052 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PABPN1LA6NDY0 278 aaKnown RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PSMD11O00231 422 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 TRIM38O00635 465 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 NRP2O60462 931 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 CLASP2O75122 1294 aaKnown RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 CRCPO75575 148 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 BCAS2O75934 225 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 SRPRAP08240 638 aaKnown RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 CNPP09543 421 aaKnown RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 OR56A5P0C7T3 313 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 MTHFD2P13995 350 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 CHRM3P20309 590 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 BMPR1AP36894 532 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 CSKP41240 450 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PLOD1Q02809 727 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 KLC1Q07866 573 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 TRAF2Q12933 501 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 BNIP2Q12982 314 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 SP140Q13342 867 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 NFATC2Q13469 925 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PEX6Q13608 980 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 IHHQ14623 411 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 MYLK3Q32MK0 819 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 MMEL1Q495T6 779 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 UNC50Q53HI1 259 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 CARD16Q5EG05 197 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ZRANB3Q5FWF4 1079 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PIGGQ5H8A4 983 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PTRHD1Q6GMV3 140 aaKnown RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PAQR3Q6TCH7 311 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 KIAA0907Q7Z7F0 614 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 NLRP8Q86W28 1048 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 DSELQ8IZU8 1212 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 CMTM8Q8IZV2 173 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 AHI1Q8N157 1196 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PTGR2Q8N8N7 351 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ARL14EPQ8N8R7 260 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 GLB1L3Q8NCI6 653 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PDPRQ8NCN5 879 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ADCY4Q8NFM4 1077 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ADAMTS19Q8TE59 1207 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ZNF483Q8TF39 744 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 UBTD2Q8WUN7 234 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ANKRD49Q8WVL7 239 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 FUBP1Q96AE4 644 aaKnown RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 NDNQ99608 321 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 SUV39H2Q9H5I1 410 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 WDR41Q9HAD4 459 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 SDR39U1Q9NRG7 319 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 POLR3BQ9NW08 1133 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PKD2L2Q9NZM6 624 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 ZIM2Q9NZV7 527 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 MARCH4Q9P2E8 410 aaPredicted RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 DKK3Q9UBP4 350 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PSMD13Q9UNM6 376 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 L3MBTL1Q9Y468 752 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 OARD1Q9Y530 152 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 PCDHGC4Q9Y5F7 938 aa8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 COPG1Q9Y678 874 aaKnown RBP8.64□□□□□ -1.03
SNRNP40-202ENST00000373720 TSPAN11A1L157 253 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 SERTM1A2A2V5 107 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 KLHL33A6NCF5 533 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 LEFTY2O00292 366 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ZBTB14O43829 449 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 TSPAN3O60637 253 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 TBX10O75333 385 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 CDK14O94921 469 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 CAPNS1P04632 268 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 C8GP07360 202 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 MPC1LP0DKB6 136 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 UMPSP11172 480 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 GM2AP17900 193 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ACRV1P26436 265 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 FMO4P31512 558 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 GGT5P36269 586 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 ABL2P42684 1182 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 NUDT2P50583 147 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 CLCN7P51798 805 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 HNRNPFP52597 415 aaKnown RBP8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 AP1S2P56377 157 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 TRIM25Q14258 630 aaKnown RBP8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 FASTKQ14296 549 aaKnown RBP8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 RPS6KA2Q15349 733 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 PFKFB4Q16877 469 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 MAP7D1Q3KQU3 841 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 UGT3A2Q3SY77 523 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 PDCD4Q53EL6 469 aaKnown RBP8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 PLEKHS1Q5SXH7 462 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 RARS2Q5T160 578 aaKnown RBP8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 TXNDC8Q6A555 127 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 TMEM207Q6UWW9 146 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 FRA10AC1Q70Z53 315 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 GAREM2Q75VX8 874 aa8.63□□□□□ -1.03
SNRNP40-202ENST00000373720 DHDDSQ86SQ9 333 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms