RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NSMCE2Q96MF7 247 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 BDH2Q9BUT1 245 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 TRIM62Q9BVG3 475 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 TFB2MQ9H5Q4 396 aaKnown RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 SH3BP1Q9Y3L3 701 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 TTC3P53804 2025 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 A0A1W2PQH9 124 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 H0YAE9 185 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 UPK1AO00322 258 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 ENPP3O14638 875 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 KERAO60938 352 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 ODC1P11926 461 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 TMBIM6P55061 237 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 SELPLGQ14242 412 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 AASDHQ4L235 1098 aaPredicted RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 BROXQ5VW32 411 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 PAQR3Q6TCH7 311 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 SPATA19Q7Z5L4 167 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 SFRP1Q8N474 314 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 NAT16Q8N8M0 369 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 PDZD8Q8NEN9 1154 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 PNPT1Q8TCS8 783 aaKnown RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 CHPT1Q8WUD6 406 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 TMBIM1Q969X1 311 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 ESAMQ96AP7 390 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 CYP2S1Q96SQ9 504 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 CSF3RQ99062 836 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 AARSD1Q9BTE6 412 aaKnown RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 ADNPQ9H2P0 1102 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 EVLQ9UI08 416 aaPredicted RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 ZNF225Q9UK10 706 aa16.26■□□□□ 0.19
SDC4-201ENST00000372733 PAIP2BQ9ULR5 123 aaKnown RBP16.26■□□□□ 0.19
SDC4-201ENST00000372733 C1orf232A0A0U1RR37 186 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 IQCA1LA6NCM1 817 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 TMEM221A6NGB7 291 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 CDC7O00311 574 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 VPS4BO75351 444 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 MLLT6P55198 1093 aaPredicted RBP16.25■□□□□ 0.19
SDC4-201ENST00000372733 MTPNP58546 118 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 PHEXP78562 749 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 YWHAHQ04917 246 aaPredicted RBP16.25■□□□□ 0.19
SDC4-201ENST00000372733 PLA2G4EQ3MJ16 856 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 ANKS6Q68DC2 871 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 MRNIPQ6NTE8 343 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 TLK2Q86UE8 772 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 LRRC49Q8IUZ0 686 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 SCML4Q8N228 414 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 NUDT8Q8WV74 236 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 PPM1MQ96MI6 270 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 PKMYT1Q99640 499 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 TRNAU1APQ9NX07 287 aaKnown RBP16.25■□□□□ 0.19
SDC4-201ENST00000372733 NPEPPSL1A6NEC2 478 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 PDHXO00330 501 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 SNX2O60749 519 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 B3GAT3O94766 335 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 RHOBTB1O94844 696 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 RPS17P08708 135 aaKnown RBP16.25■□□□□ 0.19
SDC4-201ENST00000372733 FUT4P22083 530 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 NR4A1P22736 598 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 HTR1EP28566 365 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 BEX3Q00994 111 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 DAG1Q14118 895 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 UPP1Q16831 310 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 XKR7Q5GH72 579 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 GLYATQ6IB77 296 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 BEND5Q7L4P6 421 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 STK32CQ86UX6 486 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 RIMKLAQ8IXN7 391 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 CLEC4FQ8N1N0 589 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 UMODL1-AS1Q8N2C9 162 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 DTWD1Q8N5C7 304 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 TSPEARQ8WU66 669 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 SLC22A17Q8WUG5 538 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 RSPH1Q8WYR4 309 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 ACBD6Q9BR61 282 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 CATSPERZQ9NTU4 200 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 SUN2Q9UH99 717 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 GNPTGQ9UJJ9 305 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 PCDHGA4Q9Y5G9 962 aa16.25■□□□□ 0.19
SDC4-201ENST00000372733 CFAP99D6REC4 459 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 SULT1C4O75897 302 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 THRBP10828 461 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 CDH1P12830 882 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 JUNBP17275 347 aaPredicted RBP16.24■□□□□ 0.19
SDC4-201ENST00000372733 ALDH3A2P51648 485 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 IST1P53990 364 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 ACVR1Q04771 509 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 PDCD4Q53EL6 469 aaKnown RBP16.24■□□□□ 0.19
SDC4-201ENST00000372733 R3HCC1LQ7Z5L2 792 aaKnown RBP16.24■□□□□ 0.19
SDC4-201ENST00000372733 CIR1Q86X95 450 aaPredicted RBP16.24■□□□□ 0.19
SDC4-201ENST00000372733 KIAA1191Q96A73 305 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 CNDP2Q96KP4 475 aaKnown RBP16.24■□□□□ 0.19
SDC4-201ENST00000372733 BEGAINQ9BUH8 593 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 BRINP2Q9C0B6 783 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 MED16Q9Y2X0 877 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 DGKBQ9Y6T7 804 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 CENPFP49454 3210 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 LOC285095A0A1B0GVY8 99 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 ABCB7O75027 752 aa16.24■□□□□ 0.19
SDC4-201ENST00000372733 ADAM23O75077 832 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms