RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CLPBQ9H078 707 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ACTR5Q9H9F9 607 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 NCKIPSDQ9NZQ3 722 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ZDHHC2Q9UIJ5 367 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 MBD1Q9UIS9 605 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ZFP69BQ9UJL9 534 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 PPM1HQ9ULR3 514 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ITM2BQ9Y287 266 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 RAP2CQ9Y3L5 183 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 E5RI56 91 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 KPNA3O00505 521 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 FSBPO95073 299 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 KAT7O95251 611 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 CYP2A6P11509 494 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 GM2AP17900 193 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ETV3P41162 512 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 SOX9P48436 509 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 NFKB2Q00653 900 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ARHGEF7Q14155 803 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 LYPLAL1Q5VWZ2 237 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 EP400NLQ6ZTU2 488 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 Q6ZVL8 140 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 DPPA4Q7L190 304 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 PIWIL4Q7Z3Z4 852 aaKnown RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 NKAPQ8N5F7 415 aaKnown RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ARRDC3Q96B67 414 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 RIPOR3Q96MK2 946 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 SIKE1Q9BRV8 207 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ILKAPQ9H0C8 392 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 WWP1Q9H0M0 922 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 SARS2Q9NP81 518 aaKnown RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 DHRS7Q9Y394 339 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 MTCH2Q9Y6C9 303 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 IGLV3-16A0A075B6K0 115 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 NPEPPSL1A6NEC2 478 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 FCHO1O14526 889 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 KERAO60938 352 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 ECI2O75521 394 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 HNRNPLP14866 589 aaKnown RBP eCLIP13.64□□□□□ -0.23
PTPRF-202ENST00000372405 ITGB6P18564 788 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 SKIV2L2P42285 1042 aaKnown RBP13.64□□□□□ -0.23
PTPRF-202ENST00000372405 IDH3AP50213 366 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 ATP6V0D1P61421 351 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 ADGRE1Q14246 886 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 ELAVL3Q14576 367 aaKnown RBP13.64□□□□□ -0.23
PTPRF-202ENST00000372405 FAM219BQ5XKK7 198 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 EGFLAMQ63HQ2 1017 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 PTRHD1Q6GMV3 140 aaKnown RBP13.64□□□□□ -0.23
PTPRF-202ENST00000372405 SERPINA13PQ6UXR4 307 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 MACC1Q6ZN28 852 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 SLC22A9Q8IVM8 553 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 PIP4K2CQ8TBX8 421 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 FUBP1Q96AE4 644 aaKnown RBP13.64□□□□□ -0.23
PTPRF-202ENST00000372405 ERLEC1Q96DZ1 483 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 CCDC126Q96EE4 140 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 LINGO1Q96FE5 620 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 TTYH1Q9H313 450 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-202ENST00000372405 GSTO2Q9H4Y5 243 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 COG4Q9H9E3 785 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 TNFRSF12AQ9NP84 129 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 PKD2L2Q9NZM6 624 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 LMCD1Q9NZU5 365 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 THAP10Q9P2Z0 257 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-202ENST00000372405 GNPTGQ9UJJ9 305 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 TRIM33Q9UPN9 1127 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 PRUNE2Q8WUY3 3088 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 ATG2BQ96BY7 2078 aa13.64□□□□□ -0.23
PTPRF-202ENST00000372405 LRRC14BA6NHZ5 514 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 F8W8V4 182 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 MATN2O00339 956 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 PLK4O00444 970 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 BTN3A1O00481 513 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 GRID2O43424 1007 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 CBX6O95503 412 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 PRNPP04156 253 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 IMPDH1P20839 514 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 TARSP26639 723 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 PPARGP37231 505 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 EIF2DP41214 584 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 RPL14P50914 215 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 IL2P60568 153 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ASPHQ12797 758 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 COL19A1Q14993 1142 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 UNC50Q53HI1 259 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ZNF678Q5SXM1 525 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 LIPIQ6XZB0 460 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 FRMD7Q6ZUT3 714 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 TECPR1Q7Z6L1 1165 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 TMIEQ8NEW7 156 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 L3HYPDHQ96EM0 354 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 TTC1Q99614 292 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 TRMT61BQ9BVS5 477 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 DNAJC28Q9NX36 388 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 CACNA2D2Q9NY47 1150 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ZDHHC3Q9NYG2 299 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 ARMCX1Q9P291 453 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 CKAP5Q14008 2032 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 TMEM233B4DJY2 109 aa13.63□□□□□ -0.23
PTPRF-202ENST00000372405 UBFD1O14562 309 aaKnown RBP13.63□□□□□ -0.23
PTPRF-202ENST00000372405 UNC5CO95185 931 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms