RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 LSM7Q9UK45 103 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 RAB21Q9UL25 225 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 ZNF510Q9Y2H8 683 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 TBC1D30Q9Y2I9 924 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 SIT1Q9Y3P8 196 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 RAD54BQ9Y620 910 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 WNT6Q9Y6F9 365 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 EYSQ5T1H1 3165 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 NYNRINQ9P2P1 1898 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 A0A0D9SEW6 157 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 C5orf60A6NFR6 353 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 FAM90A27PA6NNH2 459 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 J3KR12 359 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 KCNK1O00180 336 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 HRKO00198 91 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 KCNN4O15554 427 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 MAFKO60675 156 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 CLDN11O75508 207 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 GCATO75600 419 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 IFNB1P01574 187 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 FUCA1P04066 466 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 H2AFXP16104 143 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 PTPN3P26045 913 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 OR1E1P30953 314 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 STIP1P31948 543 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 GARSP41250 739 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 STT3AP46977 705 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 MAPKAPK2P49137 400 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 VPS41P49754 854 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 NDST2P52849 883 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 MAPK10P53779 464 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 GNA12Q03113 381 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 AP1B1Q10567 949 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 ZBTB17Q13105 803 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 ZNF177Q13360 481 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 PMS2P11Q13670 270 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 POLD3Q15054 466 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 PPP1R7Q15435 360 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 KRTAP19-4Q3LI73 84 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 FAM153CQ494X1 144 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 RABGAP1LQ5R372 815 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 WDR93Q6P2C0 686 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 RHBDF2Q6PJF5 856 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 LEKR1Q6ZMV7 388 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 TPGS1Q6ZTW0 290 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 BZW1Q7L1Q6 419 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 CHST9Q7L1S5 443 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 FAM129CQ86XR2 697 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 CDKL3Q8IVW4 592 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 GSPT2Q8IYD1 628 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 CARNMT1Q8N4J0 409 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 CELF5Q8N6W0 485 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 TDRD5Q8NAT2 981 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 HJURPQ8NCD3 748 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 CCNYQ8ND76 341 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 OR7D4Q8NG98 312 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 CCDC110Q8TBZ0 833 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 GRK7Q8WTQ7 553 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 TFB1MQ8WVM0 346 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 HTR3CQ8WXA8 447 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 IFT81Q8WYA0 676 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 SUSD6Q92537 303 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 SMARCD2Q92925 531 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 ARHGEF2Q92974 986 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 ALG14Q96F25 216 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 ZNF419Q96HQ0 510 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 LMLNQ96KR4 655 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 CDX2Q99626 313 aaPredicted RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 RPP25Q9BUL9 199 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 POMKQ9H5K3 350 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 TRPV4Q9HBA0 871 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 PCDH9Q9HC56 1237 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 ZDHHC18Q9NUE0 388 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 PLK2Q9NYY3 685 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 GDE1Q9NZC3 331 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 FAM153AQ9UHL3 310 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 POLG2Q9UHN1 485 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 IPO11Q9UI26 975 aaKnown RBP3.59□□□□□ -1.83
MCF2-202ENST00000370573 CDH7Q9ULB5 785 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 OR51B4Q9Y5P0 310 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 ACTL7AQ9Y615 435 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 CHD5Q8TDI0 1954 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 XIRP2A4UGR9 3374 aa3.59□□□□□ -1.83
MCF2-202ENST00000370573 SHROOM3Q8TF72 1996 aa3.59□□□□□ -1.84
MCF2-202ENST00000370573 A0A1B0GVM2 712 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 TCRBV7S3A2A0A539 114 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 ILVBLA1L0T0 632 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 LRRC14BA6NHZ5 514 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 ARHGAP42A6NI28 874 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 HEPACAM2A8MVW5 462 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 H3BQ06 376 aaPredicted RBP3.58□□□□□ -1.84
MCF2-202ENST00000370573 RNF103O00237 685 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 MATN3O15232 486 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 PRAMEF11O60813 436 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 RAMP2O60895 175 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 SEC31AO94979 1220 aaKnown RBP3.58□□□□□ -1.84
MCF2-202ENST00000370573 LUC7L3O95232 432 aaKnown RBP3.58□□□□□ -1.84
MCF2-202ENST00000370573 METTL18O95568 372 aa3.58□□□□□ -1.84
MCF2-202ENST00000370573 CD160O95971 181 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms