RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 GPR3P46089 330 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 GEMP55040 296 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 KLF1Q13351 362 aaPredicted RBP18.16■□□□□ 0.5
CLN3-202ENST00000355477 BIRC2Q13490 618 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 PTPRCAPQ14761 206 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 ITPRIPL1Q6GPH6 555 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 RANBP10Q6VN20 620 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 ZNF761Q86XN6 746 aaPredicted RBP18.16■□□□□ 0.5
CLN3-202ENST00000355477 PHYKPLQ8IUZ5 450 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 SPACA3Q8IXA5 215 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 SFRP1Q8N474 314 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 FBXO39Q8N4B4 442 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 ZNF248Q8NDW4 579 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 SPATA13Q96N96 652 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 APOL2Q9BQE5 337 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 FERMT1Q9BQL6 677 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 NUDT22Q9BRQ3 303 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 STRADBQ9C0K7 418 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 HACD3Q9P035 362 aa18.16■□□□□ 0.5
CLN3-202ENST00000355477 R3HDM2Q9Y2K5 976 aaKnown RBP18.16■□□□□ 0.5
CLN3-202ENST00000355477 PLD2O14939 933 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 GPR39O43194 453 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A9O60656 530 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 SNX2O60749 519 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 CPNE6O95741 557 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 HOXB3P14651 431 aaPredicted RBP18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A6P19224 532 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A1P22309 533 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A4P22310 534 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A3P35503 534 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 FASLGP48023 281 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 CFHR1Q03591 330 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 CHRNA6Q15825 494 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 MAP9Q49MG5 647 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.15■□□□□ 0.5
CLN3-202ENST00000355477 IYDQ6PHW0 289 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 CRTC3Q6UUV7 619 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 GLT6D1Q7Z4J2 308 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 PIM3Q86V86 326 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 RNF10Q8N5U6 811 aaKnown RBP18.15■□□□□ 0.5
CLN3-202ENST00000355477 VPS35Q96QK1 796 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A7Q9HAW7 530 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A10Q9HAW8 530 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 UGT1A8Q9HAW9 530 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 KLC4Q9NSK0 619 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 ARL5AQ9Y689 179 aa18.15■□□□□ 0.5
CLN3-202ENST00000355477 SMG1Q96Q15 3661 aaKnown RBP18.14■□□□□ 0.5
CLN3-202ENST00000355477 IGHV1OR21-1A0A087WYE8 117 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 GOLGA6L6A8MZA4 724 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 GAPDHSO14556 408 aaPredicted RBP18.14■□□□□ 0.49
CLN3-202ENST00000355477 VEGFDO43915 354 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 STK10O94804 968 aaKnown RBP18.14■□□□□ 0.49
CLN3-202ENST00000355477 GSDMDP57764 484 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 TLE3Q04726 772 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 MSLNQ13421 630 aaPredicted RBP18.14■□□□□ 0.49
CLN3-202ENST00000355477 PLA2G4EQ3MJ16 856 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 PHF19Q5T6S3 580 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 FAM151BQ6UXP7 276 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 CLEC14AQ86T13 490 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 ZNF547Q8IVP9 402 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 PRDM8Q9NQV8 689 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 GUCA1BQ9UMX6 200 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 AAR2Q9Y312 384 aaKnown RBP18.14■□□□□ 0.49
CLN3-202ENST00000355477 LOXL2Q9Y4K0 774 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 KCTD3Q9Y597 815 aa18.14■□□□□ 0.49
CLN3-202ENST00000355477 IGHV5-10-1A0A0J9YXX1 117 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 C5orf60A6NFR6 353 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 GPR89AB7ZAQ6 455 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 CDK14O94921 469 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 PTMAP06454 111 aaKnown RBP18.13■□□□□ 0.49
CLN3-202ENST00000355477 ITGA2BP08514 1039 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 GPR89BP0CG08 455 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 F3P13726 295 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 ZNF7P17097 686 aaPredicted RBP18.13■□□□□ 0.49
CLN3-202ENST00000355477 ITIH1P19827 911 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 CSF2RBP32927 897 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 SPAM1P38567 509 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 CLCNKAP51800 687 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 TMEM115Q12893 351 aaPredicted RBP18.13■□□□□ 0.49
CLN3-202ENST00000355477 EIF3IQ13347 325 aaKnown RBP18.13■□□□□ 0.49
CLN3-202ENST00000355477 SPARCL1Q14515 664 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 PRPSAP1Q14558 356 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 C16orf72Q14CZ0 275 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 DENND5AQ6IQ26 1287 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 LRRTM4Q86VH4 590 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 FAM71DQ8N9W8 422 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 TTC13Q8NBP0 860 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 DTX3LQ8TDB6 740 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 PRORYQ9H606 182 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 KCNK4Q9NYG8 393 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 SCHIP1Q9P0W5 487 aaPredicted RBP18.13■□□□□ 0.49
CLN3-202ENST00000355477 PKP3Q9Y446 797 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 ATMQ13315 3056 aa18.13■□□□□ 0.49
CLN3-202ENST00000355477 GLYATL1P3A0A0U1RQE8 302 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 GOLGA6L9A6NEM1 432 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 PRR19A6NJB7 356 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 KMOO15229 486 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 ZW10O43264 779 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 METTL18O95568 372 aa18.12■□□□□ 0.49
CLN3-202ENST00000355477 SLC5A2P31639 672 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms