RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CCDC154A6NI56 674 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 WISP3O95389 354 aaPredicted RBP22.22■■□□□ 1.15
TRIM28-202ENST00000341753 ALDH2P05091 517 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 IDO1P14902 403 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 RAB44Q7Z6P3 723 aaPredicted RBP22.22■■□□□ 1.15
TRIM28-202ENST00000341753 TFAP2DQ7Z6R9 452 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 C14orf80Q86SX3 495 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 C2orf69Q8N8R5 385 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 GOLM1Q8NBJ4 401 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 PDPRQ8NCN5 879 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 OSCP1Q8WVF1 389 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 BDH2Q9BUT1 245 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 YIPF2Q9BWQ6 316 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 SMURF2Q9HAU4 748 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 PCDH12Q9NPG4 1184 aa22.22■■□□□ 1.15
TRIM28-202ENST00000341753 SUPT3HB4E1H0 165 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 CYBBP04839 570 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 JAK1P23458 1154 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 TIAL1Q01085 375 aaKnown RBP eCLIP22.21■■□□□ 1.15
TRIM28-202ENST00000341753 KCNC4Q03721 635 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 MEP1AQ16819 746 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 RAB2BQ8WUD1 216 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 SACM1LQ9NTJ5 587 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 NOBOXO60393 691 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 FGF4P08620 206 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 PIRTP0C851 137 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 HOXD12P35452 270 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 ZFP36L2P47974 494 aaKnown RBP22.21■■□□□ 1.15
TRIM28-202ENST00000341753 TPD52P55327 224 aaPredicted RBP22.21■■□□□ 1.15
TRIM28-202ENST00000341753 MTPNP58546 118 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 SELPLGQ14242 412 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 GLYATQ6IB77 296 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 CXCL17Q6UXB2 119 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 PTRH1Q86Y79 214 aaKnown RBP22.21■■□□□ 1.15
TRIM28-202ENST00000341753 CCDC117Q8IWD4 279 aaPredicted RBP22.21■■□□□ 1.15
TRIM28-202ENST00000341753 SPARTQ8N0X7 666 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 PPM1MQ96MI6 270 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 FUNDC2Q9BWH2 189 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 ST3GAL5Q9UNP4 418 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 ZNF236Q9UL36 1845 aa22.21■■□□□ 1.15
TRIM28-202ENST00000341753 J3KR12 359 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 ABCB7O75027 752 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 SCNN1GP51170 649 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 CLCQ05315 142 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 GTF2IRD2BQ6EKJ0 949 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 GTF2IRD2Q86UP8 949 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 PAPD5Q8NDF8 572 aaKnown RBP22.2■■□□□ 1.14
TRIM28-202ENST00000341753 TOR3AQ9H497 397 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 ZNF639Q9UID6 485 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 IKZF3Q9UKT9 509 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 UPK1AO00322 258 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 THRBP10828 461 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 CRHBPP24387 322 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 IL12AP29459 219 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 CPT1AP50416 773 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 NFKB2Q00653 900 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 LAPTM5Q13571 262 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 RCAN2Q14206 197 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 SEMA3AQ14563 771 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 AAK1Q2M2I8 961 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 TMEM53Q6P2H8 277 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 CRTC3Q6UUV7 619 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 NRBF2Q96F24 287 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 YTHDF1Q9BYJ9 559 aaKnown RBP22.2■■□□□ 1.14
TRIM28-202ENST00000341753 PCDHGA8Q9Y5G5 932 aa22.2■■□□□ 1.14
TRIM28-202ENST00000341753 BCAS1O75363 584 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-202ENST00000341753 AGXTP21549 392 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 PURAQ00577 322 aaKnown RBP22.19■■□□□ 1.14
TRIM28-202ENST00000341753 ZNF33AQ06730 810 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 SLC10A7Q0GE19 358 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 TAF1CQ15572 869 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-202ENST00000341753 PARP8Q8N3A8 854 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 FAM86B1Q8N7N1 296 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 PNPT1Q8TCS8 783 aaKnown RBP22.19■■□□□ 1.14
TRIM28-202ENST00000341753 MYLPFQ96A32 169 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 NSMCE2Q96MF7 247 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 PALMDQ9NP74 551 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 CPQQ9Y646 472 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 HTR3EA5X5Y0 456 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 ENPP3O14638 875 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 HTR1AP08908 422 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 HTR1BP28222 390 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 AGTR2P50052 363 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 YWHAHQ04917 246 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-202ENST00000341753 FOXM1Q08050 763 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 DAG1Q14118 895 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 BPIFB1Q8TDL5 484 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 ALPK1Q96QP1 1244 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 HBEGFQ99075 208 aa22.19■■□□□ 1.14
TRIM28-202ENST00000341753 FNDC1Q4ZHG4 1894 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-202ENST00000341753 PTGES3LE9PB15 166 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 H0YAE9 185 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 SLC22A3O75751 556 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 JUNBP17275 347 aaPredicted RBP22.18■■□□□ 1.14
TRIM28-202ENST00000341753 ALDH4A1P30038 563 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 ALDH3A2P51648 485 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 THAP5Q7Z6K1 395 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 TTC16Q8NEE8 873 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 OR2T11Q8NH01 316 aa22.18■■□□□ 1.14
TRIM28-202ENST00000341753 SH3YL1Q96HL8 342 aaPredicted RBP22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms