RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 DERL2Q9GZP9 239 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 NMUR2Q9GZQ4 415 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 CLPBQ9H078 707 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 YY1AP1Q9H869 796 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 PPM1HQ9ULR3 514 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 DENND4AQ7Z401 1863 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 NPEPPSL1A6NEC2 478 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 TMEM233B4DJY2 109 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 DCTN3O75935 186 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 JUNP05412 331 aaKnown RBP18.24■□□□□ 0.51
USP39-201ENST00000323701 DNAJB13P59910 316 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 EIF4HQ15056 248 aaKnown RBP18.24■□□□□ 0.51
USP39-201ENST00000323701 WDR75Q8IWA0 830 aaKnown RBP18.24■□□□□ 0.51
USP39-201ENST00000323701 RBFAQ8N0V3 343 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.24■□□□□ 0.51
USP39-201ENST00000323701 OSBPL1AQ9BXW6 950 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 ARMCX1Q9P291 453 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 DKK3Q9UBP4 350 aa18.24■□□□□ 0.51
USP39-201ENST00000323701 TRMT6Q9UJA5 497 aaKnown RBP18.24■□□□□ 0.51
USP39-201ENST00000323701 A0A1W2PQ67 120 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 E5RI56 91 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 PFDN6O15212 129 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 SIX3O95343 332 aaPredicted RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 CBX6O95503 412 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 ZNF7P17097 686 aaPredicted RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 TSPAN8P19075 237 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 MMP12P39900 470 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 NCALDP61601 193 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 ACTN3Q08043 901 aaPredicted RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 ILF2Q12905 390 aaKnown RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 ARHGEF7Q14155 803 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 GPR33Q49SQ1 333 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 PIP4K2CQ8TBX8 421 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 EZH1Q92800 747 aaPredicted RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 LINGO1Q96FE5 620 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 PLEKHG4BQ96PX9 1271 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 TRMT61BQ9BVS5 477 aaKnown RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 CDH19Q9H159 772 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 SYTL2Q9HCH5 934 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 ZFP69BQ9UJL9 534 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 EDDM13A0A1B0GTR0 161 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 H2AFYO75367 372 aaKnown RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 MTX2O75431 263 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 CD9P21926 228 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 RPS3P23396 243 aaKnown RBP eCLIP18.23■□□□□ 0.513e-13■■■■□ 26.3
USP39-201ENST00000323701 WASP42768 502 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 IDH3AP50213 366 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 SETDB1Q15047 1291 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 PTRHD1Q6GMV3 140 aaKnown RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 KIAA1191Q96A73 305 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 FUBP1Q96AE4 644 aaKnown RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 LRIG1Q96JA1 1093 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 WRAP53Q9BUR4 548 aaKnown RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 TFB2MQ9H5Q4 396 aaKnown RBP18.23■□□□□ 0.51
USP39-201ENST00000323701 COG4Q9H9E3 785 aa18.23■□□□□ 0.51
USP39-201ENST00000323701 BTN3A1O00481 513 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 PPP6CO00743 305 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 FCHO1O14526 889 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 TRIM16O95361 564 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 PYGLP06737 847 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 ALOX15P16050 662 aaPredicted RBP18.22■□□□□ 0.51
USP39-201ENST00000323701 TARSP26639 723 aaKnown RBP18.22■□□□□ 0.51
USP39-201ENST00000323701 KHDC1Q4VXA5 237 aaKnown RBP18.22■□□□□ 0.51
USP39-201ENST00000323701 PELI3Q8N2H9 469 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 SREK1Q8WXA9 508 aaKnown RBP18.22■□□□□ 0.51
USP39-201ENST00000323701 PPP1R36Q96LQ0 422 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 RIPOR3Q96MK2 946 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 THAP10Q9P2Z0 257 aaPredicted RBP18.22■□□□□ 0.51
USP39-201ENST00000323701 DHRS7Q9Y394 339 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 RAP2CQ9Y3L5 183 aa18.22■□□□□ 0.51
USP39-201ENST00000323701 UBFD1O14562 309 aaKnown RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 ECI2O75521 394 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 SLC25A14O95258 325 aaPredicted RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 CYP2A6P11509 494 aaPredicted RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 ZNF30P17039 623 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 HK3P52790 923 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 IL2P60568 153 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 PFKFB4Q16877 469 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 ITPRIPL2Q3MIP1 535 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 SLC9B1Q4ZJI4 515 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 ZNF648Q5T619 568 aaPredicted RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 LIPIQ6XZB0 460 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 DPPA4Q7L190 304 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 PIWIL4Q7Z3Z4 852 aaKnown RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 MMAAQ8IVH4 418 aaKnown RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 PTGR2Q8N8N7 351 aaPredicted RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 KDM1BQ8NB78 822 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 SMRP1Q8NCR6 262 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 RHEBL1Q8TAI7 183 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 RIOK2Q9BVS4 552 aaKnown RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 SPATA16Q9BXB7 569 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 ILKAPQ9H0C8 392 aaPredicted RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 GSTO2Q9H4Y5 243 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 PRSS16Q9NQE7 514 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 COQ6Q9Y2Z9 468 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 PCDHB1Q9Y5F3 818 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 NCF1BA6NI72 391 aaPredicted RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 NCF1CA8MVU1 366 aaPredicted RBP18.21■□□□□ 0.51
USP39-201ENST00000323701 FADS2P1A8MWK0 482 aa18.21■□□□□ 0.51
USP39-201ENST00000323701 GRID2O43424 1007 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms