RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TMEM132DQ14C87 1099 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 FAM92BQ6ZTR7 304 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 C8orf59Q8N0T1 100 aaPredicted RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 MINDY1Q8N5J2 469 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TRPV1Q8NER1 839 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TARS2Q9BW92 718 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 RBM38Q9H0Z9 239 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 XPNPEP1Q9NQW7 623 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 PNO1Q9NRX1 252 aaKnown RBP6.38□□□□□ -1.39
VPS35-201ENST00000299138 GNG13Q9P2W3 67 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 VANGL2Q9ULK5 521 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 POLR1DQ9Y2S0 133 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 ALG5Q9Y673 324 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 CCDC88AQ3V6T2 1871 aa6.38□□□□□ -1.39
VPS35-201ENST00000299138 TPP1O14773 563 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PIGNO95427 931 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PLATP00750 562 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CALCAP01258 141 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CD2P06729 351 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PRG2P13727 222 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 KCNA5P22460 613 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 RPL7AP62424 266 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 ATP6AP1LQ52LC2 224 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PAGE2BQ5JRK9 111 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 DENND1BQ6P3S1 775 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 THAP5Q7Z6K1 395 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 AURKBQ96GD4 344 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 MAELQ96JY0 434 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 ERMAPQ96PL5 475 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 LENG8Q96PV6 779 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 SPON2Q9BUD6 331 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 EXD2Q9NVH0 621 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 GPRC5DQ9NZD1 345 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 SNX7Q9UNH6 387 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 TCRBV3S1A0A5B6 114 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 MOCS2O96007 188 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 RBL1P28749 1068 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 RGS7P49802 495 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CACNB2Q08289 660 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 NIPAL4Q0D2K0 466 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PCSK7Q16549 785 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 HSDL1Q3SXM5 330 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CCDC58Q4VC31 144 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 SFT2D3Q587I9 215 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CDKL4Q5MAI5 379 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 ANKRD22Q5VYY1 191 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PLET1Q6UQ28 207 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 STRA8Q7Z7C7 330 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 RBM23Q86U06 439 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 TMEM135Q86UB9 458 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CARM1Q86X55 608 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 LACC1Q8IV20 430 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 HS6ST3Q8IZP7 471 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 B3GALNT2Q8NCR0 500 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 SIK2Q9H0K1 926 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 DHRS7Q9Y394 339 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 PTCH2Q9Y6C5 1203 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 ASB14A6NK59 587 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 NDUFS3O75489 264 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CLPXO76031 633 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 SCELO95171 688 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 TRAPPC2P0DI81 140 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 TRAPPC2BP0DI82 140 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CES1P23141 567 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 FASTKQ14296 549 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 SLX4IPQ5VYV7 408 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 KCNT2Q6UVM3 1135 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CLEC14AQ86T13 490 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 MPP5Q8N3R9 675 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 DOK1Q99704 481 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 SETD4Q9NVD3 440 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 ZNF70Q9UC06 446 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 ZNF223Q9UK11 482 aaPredicted RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 LOC100509620A0A075B734 347 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 OR6A2O95222 327 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 CCNDBP1O95273 360 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 AKT1P31749 480 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 NOS2P35228 1153 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 STXBP1P61764 594 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 MRPS22P82650 360 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 FSCN1Q16658 493 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 RAB12Q6IQ22 244 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 DENND5BQ6ZUT9 1274 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 FASTKD5Q7L8L6 764 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 TTC7BQ86TV6 843 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 GPR180Q86V85 440 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 KCNMB4Q86W47 210 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 TRNT1Q96Q11 434 aaKnown RBP6.37□□□□□ -1.39
VPS35-201ENST00000299138 CATSPERBQ9H7T0 1116 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 RMND5AQ9H871 391 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 FBRSQ9HAH7 460 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 ARHGEF4Q9NR80 690 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 RNF112Q9ULX5 631 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 ERVW-1Q9UQF0 538 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 LOXHD1Q8IVV2 1947 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 OR2AT4A6NND4 320 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 SOBPA7XYQ1 873 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 THRBP10828 461 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 GPD2P43304 727 aa6.37□□□□□ -1.39
VPS35-201ENST00000299138 RAB10P61026 200 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms