RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZDHHC18Q9NUE0 388 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 KLHL42Q9P2K6 505 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 ATP6V1HQ9UI12 483 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 ABLIM1O14639 778 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 C5AR1P21730 350 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 RPS21P63220 83 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 PRKG2Q13237 762 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 ELAVL3Q14576 367 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 ESRP1Q6NXG1 681 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 GFM2Q969S9 779 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 FAM84AQ96KN4 292 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 NSMCE2Q96MF7 247 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 KLQ9UEF7 1012 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 FAF1Q9UNN5 650 aaPredicted RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 PCDHGA11Q9Y5H2 935 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 EDIL3O43854 480 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 LYPLA1O75608 230 aaPredicted RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 POU2F2P09086 479 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 ALPIP09923 528 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 PRKCHP24723 683 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 ADAM17P78536 824 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 ZNF33BQ06732 778 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 TTMPQ5BVD1 217 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 MTX3Q5HYI7 312 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 EXOC3L1Q86VI1 746 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 DCP2Q8IU60 420 aaKnown RBP13.55□□□□□ -0.24
LDLR-201ENST00000252444 OXR1Q8N573 874 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 KDM1BQ8NB78 822 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 EXOC2Q96KP1 924 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 SYT11Q9BT88 431 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 BDH2Q9BUT1 245 aa13.55□□□□□ -0.24
LDLR-201ENST00000252444 NBNO60934 754 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 ATP6V1C1P21283 382 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CLCN4P51793 760 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 RPS24P62847 133 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 RPP38P78345 283 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 OGDHQ02218 1023 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 SIRPB2Q5JXA9 342 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 EME1Q96AY2 570 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 SOHLH2Q9NX45 425 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 MYH7BA7E2Y1 1941 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 TRIM40Q6P9F5 258 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CBARPQ8N350 705 aaPredicted RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 WDTC1Q8N5D0 677 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 BATF3Q9NR55 127 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 ELOVL2Q9NXB9 296 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 TRPS1Q9UHF7 1281 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CDC14AQ9UNH5 594 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 DNMT3AQ9Y6K1 912 aaPredicted RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 NEMP2A6NFY4 417 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 EDF1O60869 148 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 ME2P23368 584 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CDKL4Q5MAI5 379 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.54□□□□□ -0.249e-8■■■■□ 21.8
LDLR-201ENST00000252444 ZNF248Q8NDW4 579 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 BTN2A2Q8WVV5 523 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 ZBP1Q9H171 429 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CALML5Q9NZT1 146 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 KLF11O14901 512 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 PRMT3O60678 531 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 EMC10Q5UCC4 262 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 ERN2Q76MJ5 926 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 GALNT7Q86SF2 657 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 TBATAQ96M53 351 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 KLF16Q9BXK1 252 aaPredicted RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 DERL2Q9GZP9 239 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 C10orf88Q9H8K7 445 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 ZNF232Q9UNY5 417 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 HOXB2P14652 356 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 TNNI3P19429 210 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CORO7P57737 925 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 MRPS22P82650 360 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 TXNL4AP83876 142 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 CTBP1Q13363 440 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 MTDHQ86UE4 582 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 GPR135Q8IZ08 494 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CLEC4FQ8N1N0 589 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 SEC14L1Q92503 715 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 DNAJC1Q96KC8 554 aaKnown RBP13.54□□□□□ -0.24
LDLR-201ENST00000252444 TNKS2Q9H2K2 1166 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 CHRAC1Q9NRG0 131 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 NDUFA13Q9P0J0 144 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 TMED5Q9Y3A6 229 aa13.54□□□□□ -0.24
LDLR-201ENST00000252444 STX16-NPEPL1H3BU86 382 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 STX16O14662 325 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 SNX3O60493 162 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 PCCBP05166 539 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 GSTM5P46439 218 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 KCNQ1P51787 676 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 PIK3R6Q5UE93 754 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 FEM1AQ9BSK4 669 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 SGK2Q9HBY8 427 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 TOR1BO14657 336 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 KERAO60938 352 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 GATMP50440 423 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 CCNHP51946 323 aaPredicted RBP13.53□□□□□ -0.24
LDLR-201ENST00000252444 RUNX3Q13761 415 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 CUZD1Q86UP6 607 aa13.53□□□□□ -0.24
LDLR-201ENST00000252444 FOXJ1Q92949 421 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms