RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 GKP32189 559 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 AIF1P55008 147 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 OCRLQ01968 901 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 LBRQ14739 615 aaKnown RBP8.62□□□□□ -1.03
VPS4B-201ENST00000238497 ZRANB3Q5FWF4 1079 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 SH2D4BQ5SQS7 431 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 SCIMPQ6UWF3 145 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 OR52B2Q96RD2 323 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 CINPQ9BW66 212 aaPredicted RBP8.62□□□□□ -1.03
VPS4B-201ENST00000238497 PRDM16Q9HAZ2 1276 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 IL1RL2Q9HB29 575 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 SSU72Q9NP77 194 aaKnown RBP8.62□□□□□ -1.03
VPS4B-201ENST00000238497 CD93Q9NPY3 652 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 MARCH4Q9P2E8 410 aaPredicted RBP8.62□□□□□ -1.03
VPS4B-201ENST00000238497 VPS28Q9UK41 221 aa8.62□□□□□ -1.03
VPS4B-201ENST00000238497 KNTC1P50748 2209 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 MAGEB16A2A368 324 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 CRCPO75575 148 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 CD1EP15812 388 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 NNMTP40261 264 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 CASP2P42575 452 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 MAGEA6P43360 314 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 HCAR3P49019 387 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 ZRSR2Q15696 482 aaKnown RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 LRRC73Q5JTD7 316 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 NADSYN1Q6IA69 706 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 ATG14Q6ZNE5 492 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 DEFB107AQ8IZN7 70 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 MAPK15Q8TD08 544 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 HEXDCQ8WVB3 486 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 SKA2Q8WVK7 121 aaPredicted RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 HSPA12BQ96MM6 686 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 GPR174Q9BXC1 333 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 EIF2B3Q9NR50 452 aaKnown RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 RXFP3Q9NSD7 469 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 KCNK4Q9NYG8 393 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 SIRPGQ9P1W8 387 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 TCAF1Q9Y4C2 921 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 DCHS1Q96JQ0 3298 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 THADAQ6YHU6 1953 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 ZNF487B1APH4 448 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 KHNYNO15037 678 aaKnown RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 SERPINF2P08697 491 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 GFAPP14136 432 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 GM2AP17900 193 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 CALB2P22676 271 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 ITPKAP23677 461 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 NUDT2P50583 147 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 SLC18A1P54219 525 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 PKNOX1P55347 436 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 OXCT1P55809 520 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 PLIN5Q00G26 463 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 RING1Q06587 406 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 LMAN2Q12907 356 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 PUM1Q14671 1186 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 MMEL1Q495T6 779 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 TRIM61Q5EBN2 209 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 ATXN7L2Q5T6C5 722 aaPredicted RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 LYSMD4Q5XG99 296 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 RGS9BPQ6ZS82 235 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 BBS5Q8N3I7 341 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 PYDC1Q8WXC3 89 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 PGAP3Q96FM1 320 aaPredicted RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 RSRC1Q96IZ7 334 aaKnown RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 MRGPRX1Q96LB2 322 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 FCRL5Q96RD9 977 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 MKRN2Q9H000 416 aaKnown RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 RHOJQ9H4E5 214 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 NOL6Q9H6R4 1146 aaKnown RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 HCN2Q9UL51 889 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 ASCC3Q8N3C0 2202 aaKnown RBP8.61□□□□□ -1.03
VPS4B-201ENST00000238497 CACNA1BQ00975 2339 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 CACNA1AO00555 2505 aa8.61□□□□□ -1.03
VPS4B-201ENST00000238497 A0A1W2PQF6 199 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 TXNDC9O14530 226 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 MUSKO15146 869 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 RHOQP17081 205 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CSKP41240 450 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 IDH3AP50213 366 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 RAB10P61026 200 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 ZNF33AQ06730 810 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 EIF4HQ15056 248 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CSRP2Q16527 193 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 POM121L1PQ3SYA9 428 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SIRPB2Q5JXA9 342 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 RABGAP1LQ5R372 815 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CLEC6AQ6EIG7 209 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 AHI1Q8N157 1196 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 OR4K2Q8NGD2 314 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 EDEM2Q9BV94 578 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SLC2A11Q9BYW1 496 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 LRMDAQ9H2I8 198 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 TCF7L2Q9NQB0 619 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 THAP10Q9P2Z0 257 aaPredicted RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SLC27A6Q9Y2P4 619 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 LRRC14BA6NHZ5 514 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SIN3BO75182 1162 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 TFEBP19484 476 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CHRM3P20309 590 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms