RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ACSL6Q9UKU0 697 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 IRAK3Q9Y616 596 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 USP19O94966 1318 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GAS2O43903 313 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PXNP49023 591 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RAB7AP51149 207 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SIM1P81133 766 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 IL9RQ01113 521 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 AGERQ15109 404 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ABRAXAS1Q6UWZ7 409 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GPR142Q7Z601 462 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KBTBD8Q8NFY9 601 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 BBS10Q8TAM1 723 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 EXTL1Q92935 676 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 C11orf70Q9BRQ4 267 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DNTTIP1Q9H147 329 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GCNT4Q9P109 453 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 USP15Q9Y4E8 981 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 IRS2Q9Y4H2 1338 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 USP27XA6NNY8 438 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 A8MUI8 341 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TRIM24O15164 1050 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 LILRB5O75023 590 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CH25HO95992 272 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CYB5R3P00387 301 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CCNE1P24864 410 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HUNKP57058 714 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RTN1Q16799 776 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RFX4Q33E94 735 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KRTCAP3Q53RY4 240 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 BEND3Q5T5X7 828 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TTC27Q6P3X3 843 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CLIP4Q8N3C7 705 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF296Q8WUU4 475 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TRAPPC12Q8WVT3 735 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TOP1MTQ969P6 601 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KCNJ15Q99712 375 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 B3GNT5Q9BYG0 378 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KCNN2Q9H2S1 579 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DAPK1P53355 1430 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 M0R3G1 203 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 LPXNO60711 386 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 XYLBO75191 536 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CPB1P15086 417 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 EIF2S3P41091 472 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MEOX2P50222 304 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DYNLL1P63167 89 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PM20D1Q6GTS8 502 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 FDX2Q6P4F2 183 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RBM43Q6ZSC3 357 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PHTF2Q8N3S3 785 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 FBXL13Q8NEE6 735 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MAGEE2Q8TD90 523 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GPR152Q8TDT2 470 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GMCL1Q96IK5 515 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SEPT5Q99719 369 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 OR2B2Q9GZK3 357 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GPRC5DQ9NZD1 345 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HRH3Q9Y5N1 445 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MAP3K15Q6ZN16 1313 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PLXND1Q9Y4D7 1925 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ISPDA4D126 451 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SAGE2PA6NJ88 616 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ADAM10O14672 748 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MATN4O95460 622 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 FTLP02792 175 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 STSP08842 583 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 H2AFXP16104 143 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HNRNPFP52597 415 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RPS6P62753 249 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF616Q08AN1 781 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ARHGAP19Q14CB8 494 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HSD17B12Q53GQ0 312 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 WDR74Q6RFH5 385 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TPTE2Q6XPS3 522 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CADM2Q8N3J6 435 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NSUN7Q8NE18 718 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TAS2R10Q9NYW0 307 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PRELID3BQ9Y3B1 194 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CYP2C8P10632 490 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PSKH1P11801 424 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF14P17017 642 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 HIBADHP31937 336 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF81P51508 661 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PRPS1P60891 318 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 HERC6Q8IVU3 1022 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 OR4Q3Q8NH05 313 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SLC2A9Q9NRM0 540 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 FAIMQ9NVQ4 179 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SEC14L4Q9UDX3 406 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 REXO2Q9Y3B8 237 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 RGS14O43566 566 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 PSMG1O95456 288 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 GH2P01242 217 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 NDUFS1P28331 727 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 EIF2S3LQ2VIR3 472 aaKnown RBP3.55□□□□□ -1.84
SCN1A-221ENST00000641996 VPS26BQ4G0F5 336 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 MFSD7Q6UXD7 560 aa3.55□□□□□ -1.84
SCN1A-221ENST00000641996 SZRD1Q7Z422 152 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms