RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ANKRD1Q15327 319 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PDCD2Q16342 344 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 BAK1Q16611 211 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TMEM95Q3KNT9 176 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SLC9B1Q4ZJI4 515 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 CXorf66Q5JRM2 361 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 KCNT1Q5JUK3 1230 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SLC9C2Q5TAH2 1124 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SERTAD4-AS1Q5TG53 156 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 FRG2Q64ET8 278 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ATG16L1Q676U5 607 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 LCN10Q6JVE6 187 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 WDR73Q6P4I2 378 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 BRAT1Q6PJG6 821 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 IL20RBQ6UXL0 311 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 B3GNT6Q6ZMB0 384 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PQLC2Q6ZP29 291 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ASB18Q6ZVZ8 466 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 Q75L30 129 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 NOL8Q76FK4 1167 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 LINGO2Q7L985 606 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TADA2BQ86TJ2 420 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 TBC1D26Q86UD7 250 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GPAT4Q86UL3 456 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 WDR63Q8IWG1 891 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 BEST3Q8N1M1 668 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GHDCQ8N2G8 530 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 Q8N377 158 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PARP8Q8N3A8 854 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PARP16Q8N5Y8 322 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ZBTB2Q8N680 514 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PCDH20Q8N6Y1 951 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 SPATA5Q8NB90 893 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 AGBL3Q8NEM8 1001 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 DNAAF1Q8NEP3 725 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ACVR1CQ8NER5 493 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PPHLN1Q8NEY8 458 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 OR2L2Q8NH16 312 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 OR2T6Q8NHC8 308 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 DUSP19Q8WTR2 217 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SLC20A1Q8WUM9 679 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PPM1EQ8WY54 764 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 RUBCNQ92622 972 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 RND1Q92730 232 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 HTRA1Q92743 480 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ABTB1Q969K4 478 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 SH3KBP1Q96B97 665 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 FBXL8Q96CD0 374 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PABPC5Q96DU9 382 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 PERPQ96FX8 193 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GRAMD2BQ96HH9 432 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SENP5Q96HI0 755 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 UBXN10Q96LJ8 280 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ZNF354BQ96LW1 612 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 ZSCAN31Q96LW9 406 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 NEUROD6Q96NK8 337 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 NR1H4Q96RI1 486 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 FAM110AQ9BQ89 295 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PIGQQ9BRB3 760 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 MXRA8Q9BRK3 442 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 FAM167BQ9BTA0 163 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 HEMGNQ9BXL5 484 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GPR63Q9BZJ6 419 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 USP44Q9H0E7 712 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 INTS2Q9H0H0 1204 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 PPP1R3EQ9H7J1 279 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 C17orf75Q9HAS0 396 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SEBOXQ9HB31 216 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 MAGEE1Q9HCI5 957 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 LTB4R2Q9NPC1 389 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 CNGB3Q9NQW8 809 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SMYD2Q9NRG4 433 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 SLC6A13Q9NSD5 602 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 GPR83Q9NYM4 423 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 CISD1Q9NZ45 108 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 LUZP4Q9P127 313 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 HCN3Q9P1Z3 774 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 NYAP2Q9P242 653 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PDP2Q9P2J9 529 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PEMTQ9UBM1 199 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 A4GNTQ9UNA3 340 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 CARD8Q9Y2G2 431 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 DDX52Q9Y2R4 599 aaKnown RBP eCLIP0.44□□□□□ -2.34
VPS35-212ENST00000640313 OR2W1Q9Y3N9 320 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 PYGO1Q9Y3Y4 419 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 LSM4Q9Y4Z0 139 aaKnown RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 TMEM184BQ9Y519 407 aaPredicted RBP0.44□□□□□ -2.34
VPS35-212ENST00000640313 PCDHGB5Q9Y5G0 923 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 CAPN7Q9Y6W3 813 aa0.44□□□□□ -2.34
VPS35-212ENST00000640313 HIVEP2P31629 2446 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 IGLV5-45A0A087WSX0 123 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 A0A1B0GVC2 190 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 A0A1W2PR77 199 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 C1orf226A1L170 272 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 GOLGA6L9A6NEM1 432 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 NPIPB15A6NHN6 443 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 FAM90A26D6RGX4 464 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TMEM178BH3BS89 294 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 VCYO14598 125 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 SLC22A2O15244 555 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms