RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ITGB6P18564 788 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 TAC1P20366 129 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 TMEM151AQ8N4L1 468 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 CCDC63Q8NA47 563 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 HEXDCQ8WVB3 486 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 GPR21Q99679 349 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 CD93Q9NPY3 652 aa19.94■□□□□ 0.78
CLN3-250ENST00000636839 K7ESM1 405 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 RNASEH2AO75792 299 aaKnown RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 RECQL5O94762 991 aaPredicted RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 SBK3P0C264 359 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 PTPN5P54829 565 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 GABPB1Q06547 395 aaPredicted RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 KHDC1Q4VXA5 237 aaKnown RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 HENMT1Q5T8I9 393 aaKnown RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 RNF187Q5TA31 235 aaPredicted RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 NAPRTQ6XQN6 538 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 CERS6Q6ZMG9 384 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 LRRC34Q8IZ02 419 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 SIDT2Q8NBJ9 832 aaKnown RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 GIMAP7Q8NHV1 300 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 MAFAQ8NHW3 353 aaPredicted RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 LKAAEAR1Q8TD35 194 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 FUBP1Q96AE4 644 aaKnown RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 CABS1Q96KC9 395 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 LRRK1Q38SD2 2015 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 GMNCA6NCL1 334 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 WNT9AO14904 365 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 GLULP15104 373 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 BGNP21810 368 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 KCNA4P22459 653 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 NFKBIAP25963 317 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 ELP6Q0PNE2 266 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 STARD3Q14849 445 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 MLF2Q15773 248 aaPredicted RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 GPR33Q49SQ1 333 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 ZNF776Q68DI1 518 aaPredicted RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 PAQR3Q6TCH7 311 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 FLCNQ8NFG4 579 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.93■□□□□ 0.78
CLN3-250ENST00000636839 AP2M1Q96CW1 435 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 MAGEB18Q96M61 343 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 EPN3Q9H201 632 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 CCDC68Q9H2F9 335 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 CCDC134Q9H6E4 229 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 NMRAL1Q9HBL8 299 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 SARS2Q9NP81 518 aaKnown RBP19.93■□□□□ 0.78
CLN3-250ENST00000636839 C2orf42Q9NWW7 574 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 DUSP12Q9UNI6 340 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 ANKRD6Q9Y2G4 727 aa19.93■□□□□ 0.78
CLN3-250ENST00000636839 TK2O00142 265 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 PRMT5O14744 637 aaPredicted RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 C5AR1P21730 350 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 MRPS21P82921 87 aaKnown RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 PDK4Q16654 411 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 INSCQ1MX18 579 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 TMEM52BQ4KMG9 183 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 GPRC6AQ5T6X5 926 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 KYAT3Q6YP21 454 aaKnown RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 DET1Q7L5Y6 550 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 FSTL5Q8N475 847 aaPredicted RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 KCNV2Q8TDN2 545 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 GANCQ8TET4 914 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 ZNF75CPQ92670 426 aaPredicted RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 DTD2Q96FN9 168 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 TSPAN17Q96FV3 270 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 UBXN10Q96LJ8 280 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 SLCO1B3Q9NPD5 702 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 ACSS2Q9NR19 701 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 FBXL12Q9NXK8 326 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 PLXNB3Q9ULL4 1909 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 NUMA1Q14980 2115 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 PRR23AA6NEV1 266 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 KLHL2O95198 593 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 ADH1BP00325 375 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 VIMP08670 466 aaKnown RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 CHRM3P20309 590 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 ZP2Q05996 745 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 TBC1D1Q86TI0 1168 aaPredicted RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 RBFAQ8N0V3 343 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 MOCOSQ96EN8 888 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 SGF29Q96ES7 293 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 SCYL1Q96KG9 808 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 CLPBQ9H078 707 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 ZNF395Q9H8N7 513 aaPredicted RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 CORO1CQ9ULV4 474 aaPredicted RBP19.92■□□□□ 0.78
CLN3-250ENST00000636839 VPS9D1Q9Y2B5 631 aa19.92■□□□□ 0.78
CLN3-250ENST00000636839 A0A087X1B8 175 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 KRBA1A5PL33 1030 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 IGLON5A6NGN9 336 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 H0Y858 1186 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 H3BMM5 538 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 INPP4BO15327 924 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 LZTS3O60299 673 aaPredicted RBP19.91■□□□□ 0.78
CLN3-250ENST00000636839 SOD1P00441 154 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 GSTA1P08263 222 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 ZNF7P17097 686 aaPredicted RBP19.91■□□□□ 0.78
CLN3-250ENST00000636839 ALDH3A1P30838 453 aa19.91■□□□□ 0.78
CLN3-250ENST00000636839 KCNC1P48547 511 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms