RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OR52K1Q8NGK4 314 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 CCL4L1Q8NHW4 92 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 OR2AG1Q9H205 316 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 DPEP2Q9H4A9 486 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 EIF2B3Q9NR50 452 aaKnown RBP20.51■□□□□ 0.87
CLN3-240ENST00000631023 ATXN10Q9UBB4 475 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 GULP1Q9UBP9 304 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 PIKFYVEQ9Y2I7 2098 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 LDB2O43679 373 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 HYAL3O43820 417 aaPredicted RBP20.5■□□□□ 0.87
CLN3-240ENST00000631023 VEGFDO43915 354 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 NUAK1O60285 661 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 GP1BAP07359 652 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 COILP38432 576 aaPredicted RBP20.5■□□□□ 0.87
CLN3-240ENST00000631023 BASP1P80723 227 aaKnown RBP20.5■□□□□ 0.87
CLN3-240ENST00000631023 CTBSQ01459 385 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 PTPRCAPQ14761 206 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 POU6F1Q14863 301 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 LDLRAP1Q5SW96 308 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 SLC35F3Q8IY50 421 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 GALNT15Q8N3T1 639 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 ZNF398Q8TD17 642 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 NAT6Q93015 286 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 TTC25Q96NG3 672 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 ARFGAP3Q9NP61 516 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 SMARCAL1Q9NZC9 954 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 SIRPGQ9P1W8 387 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 PADI4Q9UM07 663 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 KCTD3Q9Y597 815 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 SAR1BQ9Y6B6 198 aa20.5■□□□□ 0.87
CLN3-240ENST00000631023 LY6G6EA0A0G2JKS1 128 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 CPED1A4D0V7 1026 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 EME2A4GXA9 379 aaPredicted RBP20.49■□□□□ 0.87
CLN3-240ENST00000631023 AP3B1O00203 1094 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 GRID2O43424 1007 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 PHF2O75151 1096 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 PRAMEF1O95521 474 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 MYF5P13349 255 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 ZNF140P52738 457 aaPredicted RBP20.49■□□□□ 0.87
CLN3-240ENST00000631023 SEPT6Q14141 434 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 DHRS13Q6UX07 377 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 ADGRG6Q86SQ4 1221 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 GRK7Q8WTQ7 553 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 SCNM1Q9BWG6 230 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 ZCCHC2Q9C0B9 1178 aaKnown RBP20.49■□□□□ 0.87
CLN3-240ENST00000631023 PIH1D1Q9NWS0 290 aaKnown RBP20.49■□□□□ 0.87
CLN3-240ENST00000631023 TAAR2Q9P1P5 351 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 FKBPLQ9UIM3 349 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 U3KQA8 63 aa20.49■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A9O60656 530 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 SRP72O76094 671 aaKnown RBP20.48■□□□□ 0.87
CLN3-240ENST00000631023 KRT14P02533 472 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 ZNF8P17098 575 aaPredicted RBP20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A6P19224 532 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A1P22309 533 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A4P22310 534 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A3P35503 534 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A5P35504 534 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 CDK16Q00536 496 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 SKIDA1Q1XH10 827 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 TTC27Q6P3X3 843 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 OGFOD3Q6PK18 319 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 SLC30A9Q6PML9 568 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 CHST15Q7LFX5 561 aaPredicted RBP20.48■□□□□ 0.87
CLN3-240ENST00000631023 NRROSQ86YC3 692 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 OR6C4Q8NGE1 309 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 OR13C4Q8NGS5 318 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 IFI44Q8TCB0 444 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 STYXQ8WUJ0 223 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 ASB8Q9H765 288 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A7Q9HAW7 530 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A10Q9HAW8 530 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 UGT1A8Q9HAW9 530 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 SMOXQ9NWM0 555 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 TMPRSS11EQ9UL52 423 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 WASF3Q9UPY6 502 aa20.48■□□□□ 0.87
CLN3-240ENST00000631023 TPRP12270 2363 aaKnown RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 CDK14O94921 469 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 AK4P27144 223 aaPredicted RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 ACTR1BP42025 376 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 FNTAP49354 379 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 ACTR1AP61163 376 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 TMPRSS15P98073 1019 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 TMEM115Q12893 351 aaPredicted RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 GTF2H3Q13889 308 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 SMAD1Q15797 465 aaKnown RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 ZNF648Q5T619 568 aaPredicted RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 EFL1Q7Z2Z2 1120 aaKnown RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 KYQ8NBH2 561 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 GPR156Q8NFN8 814 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 ABCG4Q9H172 646 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 CASS4Q9NQ75 786 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 SPATS2LQ9NUQ6 558 aaKnown RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 NLE1Q9NVX2 485 aaPredicted RBP20.47■□□□□ 0.87
CLN3-240ENST00000631023 PRKAB1Q9Y478 270 aa20.47■□□□□ 0.87
CLN3-240ENST00000631023 HEATR9A2RTY3 570 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 GAPDHSO14556 408 aaPredicted RBP20.46■□□□□ 0.87
CLN3-240ENST00000631023 CHUKO15111 745 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 MTX2O75431 263 aa20.46■□□□□ 0.87
CLN3-240ENST00000631023 TOP3BO95985 862 aaKnown RBP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms