RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 BRD8Q9H0E9 1235 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 CLMPQ9H6B4 373 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 LUC7LQ9NQ29 371 aaKnown RBP18.8■□□□□ 0.6
CDX1-202ENST00000616154 KCND1Q9NSA2 647 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 PYCARDQ9ULZ3 195 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 RPL26L1Q9UNX3 145 aaKnown RBP18.8■□□□□ 0.6
CDX1-202ENST00000616154 HEMK1Q9Y5R4 338 aaPredicted RBP18.8■□□□□ 0.6
CDX1-202ENST00000616154 ALG6Q9Y672 507 aa18.8■□□□□ 0.6
CDX1-202ENST00000616154 PYCARD-AS1I3L0S3 204 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 APOL1O14791 398 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 PRLP01236 227 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 KRT1P04264 644 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 SFTPCP11686 197 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 ITGB6P18564 788 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 CA4P22748 312 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 CSTF2P33240 577 aaKnown RBP eCLIP18.79■□□□□ 0.6
CDX1-202ENST00000616154 CDKN2BP42772 138 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 ATP1A2P50993 1020 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 VAV2P52735 878 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 NIPAL4Q0D2K0 466 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 PDK1Q15118 436 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 ZFYVE27Q5T4F4 411 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 TMEM71Q6P5X7 295 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 MFSD7Q6UXD7 560 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 MARK2Q7KZI7 788 aaKnown RBP18.79■□□□□ 0.6
CDX1-202ENST00000616154 PRICKLE2Q7Z3G6 844 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 SFRP1Q8N474 314 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 CNTD1Q8N815 330 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 SLC37A2Q8TED4 501 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 HTR3CQ8WXA8 447 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 CALR3Q96L12 384 aaKnown RBP18.79■□□□□ 0.6
CDX1-202ENST00000616154 LYSMD1Q96S90 227 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 RIOK2Q9BVS4 552 aaKnown RBP18.79■□□□□ 0.6
CDX1-202ENST00000616154 TMEM9Q9P0T7 183 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 CHKBQ9Y259 395 aa18.79■□□□□ 0.6
CDX1-202ENST00000616154 RCCD1A6NED2 376 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 BTNL10A8MVZ5 291 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 B4E171 279 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 SPOPO43791 374 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 WISP1O95388 367 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 CCDC175P0C221 793 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 FAM87AP0C7U9 286 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 TSPAN7P41732 249 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 CYP4F2P78329 520 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 KCNC4Q03721 635 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 KATNAL2Q8IYT4 538 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.78■□□□□ 0.6
CDX1-202ENST00000616154 NKD1Q969G9 470 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 VPS18Q9P253 973 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 PDP2Q9P2J9 529 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 PPP2R2CQ9Y2T4 447 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 HYOU1Q9Y4L1 999 aa18.78■□□□□ 0.6
CDX1-202ENST00000616154 INPP4BO15327 924 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 DNAJC6O75061 913 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 CLDN7O95471 211 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 MMP2P08253 660 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 MPSTP25325 297 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 NR2C2P49116 596 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 ZBTB17Q13105 803 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 SLC14A2Q15849 920 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.77■□□□□ 0.6
CDX1-202ENST00000616154 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.77■□□□□ 0.6
CDX1-202ENST00000616154 CCNYQ8ND76 341 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 OR10G6Q8NH81 332 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 JPH3Q8WXH2 748 aaPredicted RBP18.77■□□□□ 0.6
CDX1-202ENST00000616154 ART4Q93070 314 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 RNF25Q96BH1 459 aaPredicted RBP18.77■□□□□ 0.6
CDX1-202ENST00000616154 TADA1Q96BN2 335 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 SLC38A3Q99624 504 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 SLC12A9Q9BXP2 914 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 MAK16Q9BXY0 300 aaKnown RBP18.77■□□□□ 0.6
CDX1-202ENST00000616154 ASPSCR1Q9BZE9 553 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 PCDH9Q9HC56 1237 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 SLC39A1Q9NY26 324 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 TTLL3Q9Y4R7 772 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 HEY1Q9Y5J3 304 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 B3GALT1Q9Y5Z6 326 aa18.77■□□□□ 0.6
CDX1-202ENST00000616154 KCNK1O00180 336 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 PPP1R12AO14974 1030 aaPredicted RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 DUX1O43812 170 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 ASMTLO95671 621 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 EML2O95834 649 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 JCHAINP01591 159 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 UGT1A3P35503 534 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 NOP2P46087 812 aaKnown RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 RAB15P59190 212 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 TFDP2Q14188 446 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 ZNF761Q86XN6 746 aaPredicted RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 LPCAT1Q8NF37 534 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 LRRN4Q8WUT4 740 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 TRIM44Q96DX7 344 aaPredicted RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 AHCYL2Q96HN2 611 aaKnown RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 WDR24Q96S15 920 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 LACRTQ9GZZ8 138 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 ZMYND15Q9H091 742 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 GOLPH3Q9H4A6 298 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 RMI1Q9H9A7 625 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 OCIAD1Q9NX40 245 aa18.76■□□□□ 0.59
CDX1-202ENST00000616154 CNOT6Q9ULM6 557 aaKnown RBP18.76■□□□□ 0.59
CDX1-202ENST00000616154 TFR2Q9UP52 801 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms