RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 ZNF564Q8TBZ8 553 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 HDAC11Q96DB2 347 aa17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 RTP4Q96DX8 246 aa17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 AGAP2Q99490 1192 aa17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 GPN2Q9H9Y4 310 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 TBC1D29Q9UFV1 150 aa17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 ANAPC2Q9UJX6 822 aa17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 CAPN11Q9UMQ6 739 aa17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 TMEM184BQ9Y519 407 aaPredicted RBP17.64■□□□□ 0.41
SHKBP1-227ENST00000602011 TRBV23OR9-2A0A075B6M9 112 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 LILRA5A6NI73 299 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 POLR1CO15160 346 aaPredicted RBP17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 INPP4BO15327 924 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 GRID2O43424 1007 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 MFSD11O43934 449 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 ANKRD34CP0C6C1 535 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 MPSTP25325 297 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 POLE2P56282 527 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 TLE1Q04724 770 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 MMRN1Q13201 1228 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 PTPRRQ15256 657 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 NFKBIBQ15653 356 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 ANKS6Q68DC2 871 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 TRIM74Q86UV6 250 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 VSIG1Q86XK7 387 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 CCDC13Q8IYE1 715 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 FAF2Q96CS3 445 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 ZSCAN5AQ9BUG6 496 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 TRIM39Q9HCM9 518 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 LUC7L2Q9Y383 392 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 TTLL3Q9Y4R7 772 aa17.63■□□□□ 0.41
SHKBP1-227ENST00000602011 A6NCN8 305 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 ZNF487B1APH4 448 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 PROSCO94903 275 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 CD48P09326 243 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 XRCC1P18887 633 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 CYB5D1Q6P9G0 228 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 RBM12BQ8IXT5 1001 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 ESX1Q8N693 406 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 CCNYQ8ND76 341 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 LPCAT1Q8NF37 534 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 APOBEC4Q8WW27 367 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 BTBD6Q96KE9 485 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 ZFYVE1Q9HBF4 777 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 MAGEE1Q9HCI5 957 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 TMEM9Q9P0T7 183 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 TMEM63CQ9P1W3 806 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 NFKBIL1Q9UBC1 381 aaPredicted RBP17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 CPNE7Q9UBL6 633 aa17.62■□□□□ 0.41
SHKBP1-227ENST00000602011 A0A087X0T9 212 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 ATP1A1P05023 1023 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 H2AFZP0C0S5 128 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 FAM228BP0C875 321 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 DCDC1P59894 354 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 NIPAL4Q0D2K0 466 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 NFATC2Q13469 925 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 SEPT6Q14141 434 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 IQCB1Q15051 598 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 QPCTQ16769 361 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 SKIDA1Q1XH10 827 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 H2AFVQ71UI9 128 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 KDELC2Q7Z4H8 507 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 WDR24Q96S15 920 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 BRD8Q9H0E9 1235 aa17.61■□□□□ 0.41
SHKBP1-227ENST00000602011 NBASA2RRP1 2371 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 RELNP78509 3460 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 A0A0U1RQS6 177 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 A8MU76 341 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 KCNJ13O60928 360 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 STK17BO94768 372 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 SLC25A14O95258 325 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 EML2O95834 649 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 RECKO95980 971 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 JCHAINP01591 159 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 HLA-DQB2P05538 268 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 ACP5P13686 325 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 ZFXP17010 805 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 PBX1P40424 430 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 UBASH3AP57075 661 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 IFI35P80217 286 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 PPIDQ08752 370 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 IHHQ14623 411 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 IL11RAQ14626 422 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 SLC14A2Q15849 920 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 SNAP47Q5SQN1 464 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 CCDC70Q6NSX1 233 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 TRAM1L1Q8N609 369 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 CTTNBP2NLQ9P2B4 639 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 KCNK6Q9Y257 313 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 PCDHB3Q9Y5E6 796 aa17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 OAS3Q9Y6K5 1087 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-227ENST00000602011 MN1Q10571 1320 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 FADS2P1A8MWK0 482 aa17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 CHUKO15111 745 aa17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 KMOO15229 486 aa17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 VEGFDO43915 354 aa17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 SNX2O60749 519 aa17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 MTA2O94776 668 aa17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 VIPP01282 170 aa17.59■□□□□ 0.41
SHKBP1-227ENST00000602011 C9P02748 559 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms