RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	KLC1	Q07866	573 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	THOC5	Q13769	683 aa	Known RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ITGA9	Q13797	1035 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	RCN2	Q14257	317 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ELAVL3	Q14576	367 aa	Known RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	GSTA3	Q16772	222 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	PPM1J	Q5JR12	505 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	C9orf64	Q5T6V5	341 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	LIPM	Q5VYY2	423 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	EGFLAM	Q63HQ2	1017 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	PGM2L1	Q6PCE3	622 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ZYG11A	Q6WRX3	759 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	KIAA0408	Q6ZU52	694 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	USP45	Q70EL2	814 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	GALNT7	Q86SF2	657 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	ZC3HC1	Q86WB0	502 aa	Known RBP	11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	MDGA1	Q8NFP4	955 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	OR13J1	Q8NGT2	312 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	OR8D1	Q8WZ84	308 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	FAM136A	Q96C01	138 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	SCRN2	Q96FV2	425 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	KLHL32	Q96NJ5	620 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	DRC3	Q9H069	523 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	HEBP1	Q9NRV9	189 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	IL1RAPL1	Q9NZN1	696 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	SLC17A6	Q9P2U8	582 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	SLC7A8	Q9UHI5	535 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	TLK1	Q9UKI8	766 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	PPIL1	Q9Y3C6	166 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	RAP2C	Q9Y3L5	183 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	KCTD3	Q9Y597	815 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341	COL4A3	Q01955	1670 aa		11.64	□□□□□ -0.55
VRK3-223	ENST00000601341		A0A088AWK7	358 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	CAPN8	A6NHC0	703 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341		A6NHS1	94 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341		K7EQS6	105 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	AURKA	O14965	403 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	MAP3K7	O43318	606 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	CTSL	P07711	333 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ALPI	P09923	528 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	DRD1	P21728	446 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	PSMA3	P25788	255 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	NFKBIA	P25963	317 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ARNT	P27540	789 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	CRABP2	P29373	138 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	HNF1B	P35680	557 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ZNF140	P52738	457 aa	Predicted RBP	11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	GRSF1	Q12849	480 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	TDG	Q13569	410 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ENPP2	Q13822	863 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ZNF805	Q5CZA5	627 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	TXNDC11	Q6PKC3	985 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	MAVS	Q7Z434	540 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	DSG4	Q86SJ6	1040 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ZSWIM9	Q86XI8	627 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	CHPF	Q8IZ52	775 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	STK40	Q8N2I9	435 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	TMIE	Q8NEW7	156 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	OR6P1	Q8NGX9	317 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	CALML6	Q8TD86	181 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	KCNV2	Q8TDN2	545 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	HDAC10	Q969S8	669 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	MSANTD3	Q96H12	275 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	DNAJC1	Q96KC8	554 aa	Known RBP	11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	SMIM14	Q96QK8	99 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	LYSMD1	Q96S90	227 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	THTPA	Q9BU02	230 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	GPR63	Q9BZJ6	419 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	SLC2A4RG	Q9NR83	387 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	NLE1	Q9NVX2	485 aa	Predicted RBP	11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	CACNA2D2	Q9NY47	1150 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	DKK3	Q9UBP4	350 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	HCN2	Q9UL51	889 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	ZNF711	Q9Y462	761 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	STON1	Q9Y6Q2	735 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	PRUNE2	Q8WUY3	3088 aa		11.63	□□□□□ -0.55
VRK3-223	ENST00000601341	GOLGA8Q	A0A0J9YX86	632 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	TSPAN11	A1L157	253 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	GOLGA8O	A6NCC3	632 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	LOC730098	B7Z3J9	87 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	GOLGA8N	F8WBI6	632 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	MATN2	O00339	956 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	HDAC3	O15379	428 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	STX7	O15400	261 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	BUD23	O43709	281 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	LYPLA1	O75608	230 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	RPP40	O75818	363 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	HSPA4L	O95757	839 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	EPHX1	P07099	455 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	SRF	P11831	508 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	IL9	P15248	144 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	HMGCL	P35914	325 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	KIR2DL1	P43626	348 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	IRX4	P78413	519 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	MXRA7	P84157	204 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	XIAP	P98170	497 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PRKAA1	Q13131	559 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PON2	Q15165	354 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	TMEM196	Q5HYL7	178 aa		11.62	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms