RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PRDM8Q9NQV8 689 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 AMACRQ9UHK6 382 aa17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 RPL26L1Q9UNX3 145 aaKnown RBP17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.41■□□□□ 0.38
SHKBP1-223ENST00000600552 GRID2O43424 1007 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 AKR1B10O60218 316 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 FASLGP48023 281 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 CLCA4Q14CN2 919 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 IYDQ6PHW0 289 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 SLC9B2Q86UD5 537 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 HDAC11Q96DB2 347 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 GPR63Q9BZJ6 419 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 CLMPQ9H6B4 373 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 KLC4Q9NSK0 619 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 VPS18Q9P253 973 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 ATXN10Q9UBB4 475 aa17.4■□□□□ 0.38
SHKBP1-223ENST00000600552 APOL1O14791 398 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 RAD1O60671 282 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC25A14O95258 325 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 KRT1P04264 644 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 ZNF8P17098 575 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 PPIDQ08752 370 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 SEPT7Q16181 437 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC18A3Q16572 532 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 ZNF569Q5MCW4 686 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 HENMT1Q5T8I9 393 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 PHYKPLQ8IUZ5 450 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 CNTD1Q8N815 330 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC35G2Q8TBE7 412 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 FATE1Q969F0 183 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 RNF25Q96BH1 459 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 FAF2Q96CS3 445 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 ASPSCR1Q9BZE9 553 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 B3GNT4Q9C0J1 378 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 ZFYVE1Q9HBF4 777 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 ZNHIT6Q9NWK9 470 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 NENFQ9UMX5 172 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 DNAJC16Q9Y2G8 782 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 PCDHGA3Q9Y5H0 932 aa17.39■□□□□ 0.37
SHKBP1-223ENST00000600552 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 MTX2O75431 263 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 WISP1O95388 367 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 TPM3P06753 285 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 PRKAR1AP10644 381 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC2A4P14672 509 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 TYRP1P17643 537 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 SQSTM1Q13501 440 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 LLGL1Q15334 1064 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 NT5DC3Q86UY8 548 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 TRIM48Q8IWZ4 208 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 UNC5BQ8IZJ1 945 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 PLD5Q8N7P1 536 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 GPR26Q8NDV2 337 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 SH3KBP1Q96B97 665 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 LYSMD1Q96S90 227 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 HERPUD2Q9BSE4 406 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 DDA1Q9BW61 102 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC12A9Q9BXP2 914 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 RMI1Q9H9A7 625 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 SARS2Q9NP81 518 aaKnown RBP17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 SPTLC3Q9NUV7 552 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 UBP1Q9NZI7 540 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 CPNE7Q9UBL6 633 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 TRIM10Q9UDY6 481 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 HYOU1Q9Y4L1 999 aa17.38■□□□□ 0.37
SHKBP1-223ENST00000600552 PDZK1P1A8MUH7 402 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 B4E171 279 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 F5H423 210 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 NUAK1O60285 661 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 PMPCBO75439 489 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 TMEM253P0C7T8 217 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 F3P13726 295 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 TSPAN7P41732 249 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 IFI35P80217 286 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 PDK1Q15118 436 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 INSCQ1MX18 579 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 CCDC70Q6NSX1 233 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 XKR5Q6UX68 686 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 PTRH1Q86Y79 214 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 OR8K1Q8NGG5 319 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 SPATA22Q8NHS9 363 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 EID2BQ96D98 161 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 CARD9Q9H257 536 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 GPN2Q9H9Y4 310 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 APMAPQ9HDC9 416 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 BPIFA1Q9NP55 256 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 ZNF711Q9Y462 761 aa17.37■□□□□ 0.37
SHKBP1-223ENST00000600552 RGSL1A5PLK6 1076 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 NKX2-8O15522 239 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 MTA2O94776 668 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 MT-CYBP00156 380 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 SFTPCP11686 197 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 AMD1P17707 334 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 ITGB6P18564 788 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 MAN1A1P33908 653 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 NOP2P46087 812 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 RAB15P59190 212 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 CDK18Q07002 472 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 FOXM1Q08050 763 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms