RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 STAG3L4Q8TBR4 150 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 MICAL1Q8TDZ2 1067 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 TRPC4APQ8TEL6 797 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 STON2Q8WXE9 905 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 RCN3Q96D15 328 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 LINGO1Q96FE5 620 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 ZSWIM3Q96MP5 696 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 RAD9AQ99638 391 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 IL26Q9NPH9 171 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 GIMAP2Q9UG22 337 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 DNAJC15Q9Y5T4 150 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 SLC30A1Q9Y6M5 507 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 NPIPB15A6NHN6 443 aaPredicted RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 CLASP2O75122 1294 aaKnown RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 THRAP10827 490 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 MYOGP15173 224 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 BPIP17213 487 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 ITGB6P18564 788 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 EEF1DP29692 281 aaKnown RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 CLCN7P51798 805 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 FPGSQ05932 587 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 CACNG1Q06432 222 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 CYLC2Q14093 348 aaPredicted RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 LRRC73Q5JTD7 316 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 TCHHL1Q5QJ38 904 aaPredicted RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 SERPINA9Q86WD7 417 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 CLDN19Q8N6F1 224 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 LKAAEAR1Q8TD35 194 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 SP7Q8TDD2 431 aaPredicted RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 MID1IP1Q9NPA3 183 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 STK39Q9UEW8 545 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 TRMT6Q9UJA5 497 aaKnown RBP14.36□□□□□ -0.11
VRK3-217ENST00000599538 PRSS21Q9Y6M0 314 aa14.36□□□□□ -0.11
VRK3-217ENST00000599538 ALPK3Q96L96 1907 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 SNUPNO95149 360 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 IGSF6O95976 241 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 CYBBP04839 570 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 PYGLP06737 847 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 PRDX3P30048 256 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 PTGER3P43115 390 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 ECT2LQ008S8 904 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 PPIGQ13427 754 aaKnown RBP eCLIP14.35□□□□□ -0.112e-6■■■■□ 20.1
VRK3-217ENST00000599538 CBX2Q14781 532 aaPredicted RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 TRMT5Q32P41 509 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 GK5Q6ZS86 529 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 RFLNAQ6ZTI6 216 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 CHSY3Q70JA7 882 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 FBXO39Q8N4B4 442 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 RP9Q8TA86 221 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 KCNJ9Q92806 393 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 ZNF570Q96NI8 536 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 TRMOQ9BU70 441 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 ATP13A3Q9H7F0 1226 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 SEMA4BQ9NPR2 832 aaPredicted RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 UTP6Q9NYH9 597 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 PIKFYVEQ9Y2I7 2098 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 E5RI56 91 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 PER2O15055 1255 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 CCNT2O60583 730 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 CIB2O75838 187 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 LMNAP02545 664 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 HSPA8P11142 646 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 SYN1P17600 705 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 EN2P19622 333 aaPredicted RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 DPP6P42658 865 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 CSNK1DP48730 415 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 CCNG1P51959 295 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 LBX1P52954 281 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 EPHA5P54756 1037 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 INHBCP55103 352 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 ATP6V0D1P61421 351 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 SATB1Q01826 763 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 ILF2Q12905 390 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 UGT3A1Q6NUS8 523 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 C22orf39Q6P5X5 142 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 MYLK4Q86YV6 388 aaPredicted RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 DSELQ8IZU8 1212 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 NKAPQ8N5F7 415 aaKnown RBP14.35□□□□□ -0.11
VRK3-217ENST00000599538 ING5Q8WYH8 240 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 STMN2Q93045 179 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 NPAS2Q99743 824 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 BBS2Q9BXC9 721 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 TUBB1Q9H4B7 451 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 ASB8Q9H765 288 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 TDP1Q9NUW8 608 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 VPS9D1Q9Y2B5 631 aa14.35□□□□□ -0.11
VRK3-217ENST00000599538 CAPN8A6NHC0 703 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 PRMT5O14744 637 aaPredicted RBP14.34□□□□□ -0.11
VRK3-217ENST00000599538 GRM6O15303 877 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 SOCS5O75159 536 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 ESR1P03372 595 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 ADARP55265 1226 aaKnown RBP14.34□□□□□ -0.11
VRK3-217ENST00000599538 IL2P60568 153 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 CLCQ05315 142 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 NFATC2Q13469 925 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 CHRNA6Q15825 494 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 MYLK3Q32MK0 819 aa14.34□□□□□ -0.11
VRK3-217ENST00000599538 AARS2Q5JTZ9 985 aaKnown RBP14.34□□□□□ -0.11
VRK3-217ENST00000599538 TMEM215Q68D42 235 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms