RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 LDLRAP1Q5SW96 308 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 RAET1GQ6H3X3 334 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 PSAPL1Q6NUJ1 521 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 CNSTQ6PJW8 725 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 CRTC1Q6UUV9 634 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 SPATS2Q86XZ4 545 aaKnown RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 CACUL1Q86Y37 369 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 NUDCD3Q8IVD9 361 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 SLC22A9Q8IVM8 553 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 CACNA2D3Q8IZS8 1091 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 MYO1HQ8N1T3 1032 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 NXPE1Q8N323 547 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 PHTF2Q8N3S3 785 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 TRAM1L1Q8N609 369 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 DEFB123Q8N688 67 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 OR2T3Q8NH03 318 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 MDM1Q8TC05 714 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 ZNF398Q8TD17 642 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 CKAP2Q8WWK9 683 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 FAM3CQ92520 227 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 KCNJ9Q92806 393 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 AP2M1Q96CW1 435 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 CHFRQ96EP1 664 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 SHDQ96IW2 340 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 NDNQ99608 321 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 CDX2Q99626 313 aaPredicted RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 AARSD1Q9BTE6 412 aaKnown RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 HDAC8Q9BY41 377 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 MRPL46Q9H2W6 279 aaKnown RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 FAM83DQ9H4H8 585 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 SUDS3Q9H7L9 328 aaPredicted RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 MANSC1Q9H8J5 431 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 CAB39LQ9H9S4 337 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 PLAC1Q9HBJ0 212 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 NMRAL1Q9HBL8 299 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 SARS2Q9NP81 518 aaKnown RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 POLMQ9NP87 494 aaPredicted RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 PCDH12Q9NPG4 1184 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 NPDC1Q9NQX5 325 aaPredicted RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 HEBP1Q9NRV9 189 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 NFKBIL1Q9UBC1 381 aaPredicted RBP6.15□□□□□ -1.42
LIG3-206ENST00000586058 LIMD1Q9UGP4 676 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 VWA7Q9Y334 891 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 PLLPQ9Y342 182 aa6.15□□□□□ -1.42
LIG3-206ENST00000586058 WDR91A4D1P6 747 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 OTOL1A6NHN0 477 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 FOXO6A8MYZ6 492 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 TCP11X1B4DZS4 312 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ARNTLO00327 626 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 GFRA3O60609 400 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SNX2O60749 519 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ATG13O75143 517 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 TM7SF2O76062 418 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 KIAA0754O94854 1291 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 AP2A2O94973 939 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 KLF8O95600 359 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 ASMTLO95671 621 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 CTSLP07711 333 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 C1SP09871 688 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SLC35E2BP0CK96 405 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 CCDC166P0CW27 439 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 CPA3P15088 417 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 CREB1P16220 341 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ZNF37AP17032 561 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 FDXRP22570 491 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 LHCGRP22888 699 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 DGKAP23743 735 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 PSMA3P25788 255 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 WASP42768 502 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 GPR1P46091 355 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 IL2P60568 153 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 IRX4P78413 519 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SATB1Q01826 763 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 PPARDQ03181 441 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 PRKCQQ04759 706 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ZBTB16Q05516 673 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 MSLNQ13421 630 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 CAMK2GQ13555 558 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 PEX6Q13608 980 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 CSHL1Q14406 222 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 IHHQ14623 411 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 PTPRCAPQ14761 206 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ACAP2Q15057 778 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 MLF2Q15773 248 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 CHI3L2Q15782 390 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 GLIPR1L2Q4G1C9 344 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 TMEM196Q5HYL7 178 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 RBM20Q5T481 1227 aaKnown RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 C9orf64Q5T6V5 341 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 KIAA1161Q6NSJ0 714 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ZNF852Q6ZMS4 543 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ZNF765Q7L2R6 523 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 OTOAQ7RTW8 1153 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 CYP2U1Q7Z449 544 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 ADAMTSL2Q86TH1 951 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 LDB1Q86U70 411 aaPredicted RBP6.14□□□□□ -1.43
LIG3-206ENST00000586058 TSPAN33Q86UF1 283 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 SERPINA9Q86WD7 417 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 CRLF3Q8IUI8 442 aa6.14□□□□□ -1.43
LIG3-206ENST00000586058 WDR75Q8IWA0 830 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms