RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ALS2CLQ60I27 953 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 KAZNQ674X7 775 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 TADA1Q96BN2 335 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 TAAR9Q96RI9 348 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 ZFYVE1Q9HBF4 777 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 KCNK4Q9NYG8 393 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 UBP1Q9NZI7 540 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 VPS18Q9P253 973 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 PCDHGA3Q9Y5H0 932 aa20.28■□□□□ 0.84
SHMT1-209ENST00000582653 CST8O60676 142 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 PECAM1P16284 738 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-209ENST00000582653 MPSTP25325 297 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 CDK18Q07002 472 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 TAZQ16635 292 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 LINC00303Q3SY05 128 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 TEX44Q53QW1 395 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 TMEM71Q6P5X7 295 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 SARM1Q6SZW1 724 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 SPOCD1Q6ZMY3 1216 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 ZNF761Q86XN6 746 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-209ENST00000582653 SFRP1Q8N474 314 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 GPR26Q8NDV2 337 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 SLC37A2Q8TED4 501 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 CCDC74BQ96LY2 380 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 RMI1Q9H9A7 625 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 GLOD4Q9HC38 313 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 PDP2Q9P2J9 529 aa20.27■□□□□ 0.84
SHMT1-209ENST00000582653 J3QKU1 62 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 PMPCBO75439 489 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 ITGB2P05107 769 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 PTPN3P26045 913 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 PRKD1Q15139 912 aaPredicted RBP20.26■□□□□ 0.83
SHMT1-209ENST00000582653 TMC3Q7Z5M5 1100 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 EXD3Q8N9H8 876 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 ZSCAN1Q8NBB4 408 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 AGBL5Q8NDL9 886 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 TEKT5Q96M29 485 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 SLC38A3Q99624 504 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 SPATA16Q9BXB7 569 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 MAGEE1Q9HCI5 957 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 ATXN10Q9UBB4 475 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 TBC1D29Q9UFV1 150 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 KCNK6Q9Y257 313 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 ZNF711Q9Y462 761 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 PCDHA13Q9Y5I0 950 aa20.26■□□□□ 0.83
SHMT1-209ENST00000582653 A0A0A6YYK5 440 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 STMND1H3BQB6 276 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 AURKAO14965 403 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 ZIC2O95409 532 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 ACP5P13686 325 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 CSTF2P33240 577 aaKnown RBP eCLIP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 CD68P34810 354 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 MARCKSL1P49006 195 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 NR2C2P49116 596 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 ARSDP51689 593 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 HADHBP55084 474 aaKnown RBP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 TFDP2Q14188 446 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 IYDQ6PHW0 289 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 ZC3H18Q86VM9 953 aaKnown RBP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 TFB1MQ8WVM0 346 aaKnown RBP20.25■□□□□ 0.83
SHMT1-209ENST00000582653 HAUS1Q96CS2 278 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 ANP32EQ9BTT0 268 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 GPR63Q9BZJ6 419 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 TMEM9Q9P0T7 183 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 SPO11Q9Y5K1 396 aa20.25■□□□□ 0.83
SHMT1-209ENST00000582653 F5H423 210 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-209ENST00000582653 PSTPIP1O43586 416 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 LCA5LO95447 670 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 THRAP10827 490 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 ZNF8P17098 575 aaPredicted RBP20.24■□□□□ 0.83
SHMT1-209ENST00000582653 CSF2RBP32927 897 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 WASHC5Q12768 1159 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 BZW1Q7L1Q6 419 aaKnown RBP20.24■□□□□ 0.83
SHMT1-209ENST00000582653 VASH2Q86V25 355 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 CCDC112Q8NEF3 446 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 NKD1Q969G9 470 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 AHCYL2Q96HN2 611 aaKnown RBP20.24■□□□□ 0.83
SHMT1-209ENST00000582653 ASPSCR1Q9BZE9 553 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 SARS2Q9NP81 518 aaKnown RBP20.24■□□□□ 0.83
SHMT1-209ENST00000582653 PCDHGA4Q9Y5G9 962 aa20.24■□□□□ 0.83
SHMT1-209ENST00000582653 ZNF462Q96JM2 2506 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 B4E171 279 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 GRID2O43424 1007 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 NUAK1O60285 661 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 SNX2O60749 519 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 ZRANB2O95218 330 aaKnown RBP eCLIP20.23■□□□□ 0.83
SHMT1-209ENST00000582653 SLC25A14O95258 325 aaPredicted RBP20.23■□□□□ 0.83
SHMT1-209ENST00000582653 NDST3O95803 873 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 BPIP17213 487 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 NFKB1P19838 968 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 TSPAN7P41732 249 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 NOMO1Q15155 1222 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 TFDP3Q5H9I0 405 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 WDR74Q6RFH5 385 aaPredicted RBP20.23■□□□□ 0.83
SHMT1-209ENST00000582653 OR10G6Q8NH81 332 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 KRT35Q92764 455 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 P3H4Q92791 437 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 EXTL1Q92935 676 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 SH3KBP1Q96B97 665 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms