RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CLIC4Q9Y696 253 aa6.15□□□□□ -1.42
SS18-214ENST00000580003 A0A087X0M5 115 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 A0A1B0GX30 115 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 KANSL1LA0AUZ9 987 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 LIPT2A6NK58 231 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 EIF4E1BA6NMX2 242 aaKnown RBP6.14□□□□□ -1.43
SS18-214ENST00000580003 CAPN9O14815 690 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 ATP2A1O14983 1001 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 LINC01565O15544 149 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 KRT86O43790 486 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 FGF17O60258 216 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 DAB1O75553 588 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 UMODP07911 640 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 CLDN20P56880 219 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 KRT81Q14533 505 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 ZSCAN23Q3MJ62 389 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 ZNF805Q5CZA5 627 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 PAPD4Q6PIY7 484 aaKnown RBP6.14□□□□□ -1.43
SS18-214ENST00000580003 ZNF704Q6ZNC4 412 aaPredicted RBP6.14□□□□□ -1.43
SS18-214ENST00000580003 RSRC2Q7L4I2 434 aaKnown RBP6.14□□□□□ -1.43
SS18-214ENST00000580003 MAATS1Q7Z4T9 603 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 SDCCAG8Q86SQ7 713 aaPredicted RBP6.14□□□□□ -1.43
SS18-214ENST00000580003 TMPRSS12Q86WS5 348 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 SLC38A5Q8WUX1 472 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 C1orf74Q96LT6 269 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 UHRF2Q96PU4 802 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 NCAPGQ9BPX3 1015 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 NEURL2Q9BR09 285 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 LRRC1Q9BTT6 524 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 MUC13Q9H3R2 512 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 MAGIXQ9H6Y5 334 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 FBXW11Q9UKB1 542 aa6.14□□□□□ -1.43
SS18-214ENST00000580003 FAM172BPA6NC97 362 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 FAM90A26D6RGX4 464 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 H3BQ06 376 aaPredicted RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 ANKRD28O15084 1053 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 SCAMP1O15126 338 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 ZNHIT1O43257 154 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 TMEM11P17152 192 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 TNFAIP3P21580 790 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 UGT1A1P22309 533 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 PPARGP37231 505 aaPredicted RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 GALCP54803 685 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 TAS2R40P59535 323 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 PHEXP78562 749 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 SETQ01105 290 aaPredicted RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 RBBP5Q15291 538 aaKnown RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 SOWAHCQ53LP3 525 aaPredicted RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 PDSS1Q5T2R2 415 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 SARM1Q6SZW1 724 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 GLDNQ6ZMI3 551 aaPredicted RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 KCTD8Q6ZWB6 473 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 TRMT1LQ7Z2T5 733 aaKnown RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 SMIM29Q86T20 159 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 DCUN1D3Q8IWE4 304 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 HACE1Q8IYU2 909 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 ZKSCAN4Q969J2 545 aaPredicted RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 MMP28Q9H239 520 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 PIGMQ9H3S5 423 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 ZHX3Q9H4I2 956 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 SH2D4AQ9H788 454 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 CORO1CQ9ULV4 474 aaPredicted RBP6.13□□□□□ -1.43
SS18-214ENST00000580003 DLGAP4Q9Y2H0 992 aa6.13□□□□□ -1.43
SS18-214ENST00000580003 DVL1O14640 695 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 GRID2O43424 1007 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 SCGB1D1O95968 90 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 FAM106CPP0CH98 169 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 LAMP2P13473 410 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 DVL1P1P54792 670 aaPredicted RBP6.12□□□□□ -1.43
SS18-214ENST00000580003 PRAMEP78395 509 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 PLIN5Q00G26 463 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 MAMLD1Q13495 774 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 LRIF1Q5T3J3 769 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 OR7E24Q6IFN5 339 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 USP43Q70EL4 1123 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 ZNF329Q86UD4 541 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 OR8K5Q8NH50 307 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 SPATA3Q8NHX4 192 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 HM13Q8TCT9 377 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 UTP15Q8TED0 518 aaKnown RBP6.12□□□□□ -1.43
SS18-214ENST00000580003 ZNF583Q96ND8 569 aa6.12□□□□□ -1.43
SS18-214ENST00000580003 POLR3CQ9BUI4 534 aaPredicted RBP6.12□□□□□ -1.43
SS18-214ENST00000580003 A0A087WYN8 130 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 F5H0A9 414 aaPredicted RBP6.11□□□□□ -1.43
SS18-214ENST00000580003 P2RY10O00398 339 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 HIST1H2ABP04908 130 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 HIST1H2ADP20671 130 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 COG7P83436 770 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 ZNF628Q5EBL2 1059 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 STXBP5Q5T5C0 1151 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 ACSM2BQ68CK6 577 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 PLEKHM3Q6ZWE6 761 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 HIST3H2AQ7L7L0 130 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 NGEFQ8N5V2 710 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 TMEM255BQ8WV15 326 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 SLC44A1Q8WWI5 657 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 SEMA3CQ99985 751 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 TMEM39BQ9GZU3 492 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 LRMDAQ9H2I8 198 aa6.11□□□□□ -1.43
SS18-214ENST00000580003 KAT14Q9H8E8 782 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms