RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MED16Q9Y2X0 877 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 PLXNB3Q9ULL4 1909 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 ATG13O75143 517 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 TM7SF2O76062 418 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 TTPAP49638 278 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 USP10Q14694 798 aaKnown RBP24.9■■□□□ 1.58
SHMT1-207ENST00000580002 WSCD2Q2TBF2 565 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 GPRC6AQ5T6X5 926 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 HECTD2Q5U5R9 776 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 CDHR3Q6ZTQ4 885 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 CYP2U1Q7Z449 544 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 GALNT7Q86SF2 657 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 PIM3Q86V86 326 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 TRAM1L1Q8N609 369 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 FAM160A2Q8N612 972 aaPredicted RBP24.9■■□□□ 1.58
SHMT1-207ENST00000580002 SLC13A1Q9BZW2 595 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 PCMTD2Q9NV79 361 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 INTS10Q9NVR2 710 aaKnown RBP24.9■■□□□ 1.58
SHMT1-207ENST00000580002 USP36Q9P275 1121 aaKnown RBP24.9■■□□□ 1.58
SHMT1-207ENST00000580002 FZD4Q9ULV1 537 aa24.9■■□□□ 1.58
SHMT1-207ENST00000580002 PLXNA2O75051 1894 aa24.89■■□□□ 1.58
SHMT1-207ENST00000580002 RGSL1A5PLK6 1076 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 RAD51BO15315 384 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 BRAFP15056 766 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 CNTFP26441 200 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 ATP1A2P50993 1020 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 IRF9Q00978 393 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 PDE1CQ14123 709 aaPredicted RBP24.89■■□□□ 1.57
SHMT1-207ENST00000580002 GPR33Q49SQ1 333 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 ZDHHC20Q5W0Z9 365 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 TRIM74Q86UV6 250 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 MTBPQ96DY7 904 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 TCF12Q99081 682 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 P2RY12Q9H244 342 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 NFKBIL1Q9UBC1 381 aaPredicted RBP24.89■■□□□ 1.57
SHMT1-207ENST00000580002 BDP1A6H8Y1 2624 aa24.89■■□□□ 1.57
SHMT1-207ENST00000580002 TYK2P29597 1187 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 ZNF284Q2VY69 593 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 TMEM259Q4ZIN3 620 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 SETMARQ53H47 684 aaPredicted RBP24.88■■□□□ 1.57
SHMT1-207ENST00000580002 SPEM1Q8N4L4 309 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 GABPB2Q8TAK5 448 aaPredicted RBP24.88■■□□□ 1.57
SHMT1-207ENST00000580002 AARSD1Q9BTE6 412 aaKnown RBP24.88■■□□□ 1.57
SHMT1-207ENST00000580002 STMN4Q9H169 189 aaPredicted RBP24.88■■□□□ 1.57
SHMT1-207ENST00000580002 FZD3Q9NPG1 666 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 ZNF358Q9NW07 568 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 INVSQ9Y283 1065 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 VWA7Q9Y334 891 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 TECTAO75443 2155 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 NIPSNAP2O75323 286 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 MAGEA12P43365 314 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 CSRP3P50461 194 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 CLCN5P51795 746 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 SLC18A2Q05940 514 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 SIGLEC14Q08ET2 396 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 CCDC15Q0P6D6 951 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 RAET1GQ6H3X3 334 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 TMEM207Q6UWW9 146 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 TAOK1Q7L7X3 1001 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 KBTBD6Q86V97 674 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 PLD6Q8N2A8 252 aaKnown RBP24.88■■□□□ 1.57
SHMT1-207ENST00000580002 SPATA6LQ8N4H0 392 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 BANPQ8N9N5 519 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 LKAAEAR1Q8TD35 194 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 EDAQ92838 391 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 SLC30A3Q99726 388 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 MYOCQ99972 504 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 SELENOSQ9BQE4 189 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 C1QTNF2Q9BXJ5 285 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 UNKQ9C0B0 810 aaKnown RBP24.88■■□□□ 1.57
SHMT1-207ENST00000580002 KCNK9Q9NPC2 374 aa24.88■■□□□ 1.57
SHMT1-207ENST00000580002 NCOR1O75376 2440 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 PCCBP05166 539 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 C2P06681 752 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 NR1D1P20393 614 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 ATP5DP30049 168 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 ITGA9Q13797 1035 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 AARS2Q5JTZ9 985 aaKnown RBP24.87■■□□□ 1.57
SHMT1-207ENST00000580002 DET1Q7L5Y6 550 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 KRT222Q8N1A0 295 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 GDAP1Q8TB36 358 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 TBRG4Q969Z0 631 aaKnown RBP eCLIP24.87■■□□□ 1.57
SHMT1-207ENST00000580002 ISL2Q96A47 359 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 LENG8Q96PV6 779 aaPredicted RBP24.87■■□□□ 1.57
SHMT1-207ENST00000580002 ZSCAN5AQ9BUG6 496 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 VPS11Q9H270 941 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 MLXIPLQ9NP71 852 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 ZDHHC3Q9NYG2 299 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 OGFRQ9NZT2 677 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 DLGAP2Q9P1A6 1054 aa24.87■■□□□ 1.57
SHMT1-207ENST00000580002 SLC31A1O15431 190 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 ITGB6P18564 788 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 PTGER3P43115 390 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 GPR1P46091 355 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 RPS21P63220 83 aaKnown RBP24.86■■□□□ 1.57
SHMT1-207ENST00000580002 TJAP1Q5JTD0 557 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 CERS6Q6ZMG9 384 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 HORMAD1Q86X24 394 aa24.86■■□□□ 1.57
SHMT1-207ENST00000580002 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.86■■□□□ 1.57
SHMT1-207ENST00000580002 BTN2A2Q8WVV5 523 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms