RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 C8orf74Q6P047 294 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 PARGQ86W56 976 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 ZNF843Q8N446 348 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 OR13H1Q8NG92 308 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 VPS35Q96QK1 796 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 RIOK2Q9BVS4 552 aaKnown RBP20.45■□□□□ 0.86
VPS53-210ENST00000571456 WHRNQ9P202 907 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 PCOLCE2Q9UKZ9 415 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 SLCO1B1Q9Y6L6 691 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 MGAQ8IWI9 3026 aa20.45■□□□□ 0.86
VPS53-210ENST00000571456 GLYATL1P3A0A0U1RQE8 302 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 GPR89AB7ZAQ6 455 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 H0Y8X5 98 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 SLC4A1P02730 911 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 GPR89BP0CG08 455 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 RXRGP48443 463 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 DRG2P55039 364 aaKnown RBP20.44■□□□□ 0.86
VPS53-210ENST00000571456 PDE1CQ14123 709 aaPredicted RBP20.44■□□□□ 0.86
VPS53-210ENST00000571456 POU6F1Q14863 301 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 KIF19Q2TAC6 998 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 DNTTIP2Q5QJE6 756 aaKnown RBP20.44■□□□□ 0.86
VPS53-210ENST00000571456 IZUMO3Q5VZ72 239 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 GPR26Q8NDV2 337 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 BTN2A2Q8WVV5 523 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 SCAMP4Q969E2 229 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 HIC2Q96JB3 615 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 TBATAQ96M53 351 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 WDR92Q96MX6 357 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 SPATA16Q9BXB7 569 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 NLE1Q9NVX2 485 aaPredicted RBP20.44■□□□□ 0.86
VPS53-210ENST00000571456 SMOXQ9NWM0 555 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 CD84Q9UIB8 345 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 ARL5AQ9Y689 179 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 ATMQ13315 3056 aa20.44■□□□□ 0.86
VPS53-210ENST00000571456 SDR42E2A6NKP2 422 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 J3QKU1 62 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 RAD51CO43502 376 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 TMEM63AO94886 807 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 SEC31AO94979 1220 aaKnown RBP20.43■□□□□ 0.86
VPS53-210ENST00000571456 TPH1P17752 444 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 GRIA1P42261 906 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 CDK3Q00526 305 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 CAV1Q03135 178 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 SEPT6Q14141 434 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 HEATR4Q86WZ0 1026 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 PLA2G15Q8NCC3 412 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 OR4K2Q8NGD2 314 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 SERPINB12Q96P63 405 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 DCBLD2Q96PD2 775 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 ELF4Q99607 663 aaPredicted RBP20.43■□□□□ 0.86
VPS53-210ENST00000571456 NAT9Q9BTE0 207 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 FAM129AQ9BZQ8 928 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 L2HGDHQ9H9P8 463 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 IL26Q9NPH9 171 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 CA5BQ9Y2D0 317 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 TCAF1Q9Y4C2 921 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 MYLKQ15746 1914 aa20.43■□□□□ 0.86
VPS53-210ENST00000571456 A0A0U1RQS6 177 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 H3BM21 787 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 MAGEA3P43357 314 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 ACVR1Q04771 509 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 GPR33Q49SQ1 333 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 DNAJC21Q5F1R6 531 aaKnown RBP20.42■□□□□ 0.86
VPS53-210ENST00000571456 CERCAMQ5T4B2 595 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 ANKRD22Q5VYY1 191 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 HIBCHQ6NVY1 386 aaPredicted RBP20.42■□□□□ 0.86
VPS53-210ENST00000571456 ZNF534Q76KX8 674 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 MARCH9Q86YJ5 346 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 CCNJLQ8IV13 435 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 PDIK1LQ8N165 341 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 SLC22A18ASQ8N1D0 253 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 SETD7Q8WTS6 366 aaKnown RBP20.42■□□□□ 0.86
VPS53-210ENST00000571456 FUBP1Q96AE4 644 aaKnown RBP20.42■□□□□ 0.86
VPS53-210ENST00000571456 ULK4Q96C45 1275 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 LRRC39Q96DD0 335 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 SGSM3Q96HU1 749 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 TRIM51Q9BSJ1 452 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 KIFC1Q9BW19 673 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 RMI1Q9H9A7 625 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 SAMD15Q9P1V8 674 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 VPS18Q9P253 973 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 PCDHGB2Q9Y5G2 931 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 SNX11Q9Y5W9 270 aa20.42■□□□□ 0.86
VPS53-210ENST00000571456 TMEM131Q92545 1883 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 TCRBV7S3A2A0A539 114 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 SOD1P00441 154 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 ITGALP20701 1170 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 CCT8P50990 548 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 SESN2P58004 480 aaPredicted RBP20.41■□□□□ 0.86
VPS53-210ENST00000571456 HNRNPKP61978 463 aaKnown RBP eCLIP20.41■□□□□ 0.86
VPS53-210ENST00000571456 TUBB4BP68371 445 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 BNC1Q01954 994 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 CBLBQ13191 982 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 CAMK2BQ13554 666 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 FZD2Q14332 565 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 HLA-BQ31612 363 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 TSTD2Q5T7W7 516 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 DUPD1Q68J44 220 aa20.41■□□□□ 0.86
VPS53-210ENST00000571456 CAND1Q86VP6 1230 aaKnown RBP20.41■□□□□ 0.86
VPS53-210ENST00000571456 SPATS2Q86XZ4 545 aaKnown RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms