RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PGAM1P18669 254 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 GABRB3P28472 473 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 POLD2P49005 469 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ARL4CP56559 192 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 YPEL5P62699 121 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 IRX4P78413 519 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 SARNPP82979 210 aaKnown RBP9.21□□□□□ -0.94
VPS35-211ENST00000569950 PDE1BQ01064 536 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 CAV1Q03135 178 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 CALCOCO2Q13137 446 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 CUL1Q13616 776 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 FRG1Q14331 258 aaKnown RBP9.21□□□□□ -0.94
VPS35-211ENST00000569950 NFATC4Q14934 902 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 SMAD1Q15797 465 aaKnown RBP9.21□□□□□ -0.94
VPS35-211ENST00000569950 DBN1Q16643 649 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ZNF789Q5FWF6 425 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 GPRC6AQ5T6X5 926 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 PDPK2PQ6A1A2 396 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 CENPUQ71F23 418 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 NLRP9Q7RTR0 991 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 C11orf96Q7Z7L8 435 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ADGRG6Q86SQ4 1221 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 LDB1Q86U70 411 aaPredicted RBP9.21□□□□□ -0.94
VPS35-211ENST00000569950 ANKMY2Q8IV38 441 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ZNF547Q8IVP9 402 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 SPNS2Q8IVW8 549 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 PDIK1LQ8N165 341 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 NXPE1Q8N323 547 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 FBXO36Q8NEA4 188 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 DDHD1Q8NEL9 900 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 OR2I1PQ8NGU4 316 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ZNF398Q8TD17 642 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 BTN2A2Q8WVV5 523 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 GLYATL1Q969I3 302 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ZNF669Q96BR6 464 aaPredicted RBP9.21□□□□□ -0.94
VPS35-211ENST00000569950 LRRC39Q96DD0 335 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 PDXPQ96GD0 296 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ZSCAN5AQ9BUG6 496 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 SPATA16Q9BXB7 569 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 FAM129AQ9BZQ8 928 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 KCTD5Q9NXV2 234 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 MOCS1Q9NZB8 636 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 NINJ2Q9NZG7 142 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 ANKRD6Q9Y2G4 727 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 PKP3Q9Y446 797 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 SNX11Q9Y5W9 270 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 RPS6KL1Q9Y6S9 549 aa9.21□□□□□ -0.94
VPS35-211ENST00000569950 PCNX2A6NKB5 2137 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 LNP1A1A4G5 178 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 MAGEB16A2A368 324 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 CHUKO15111 745 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 INPP4BO15327 924 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 MTX2O75431 263 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 PIAS1O75925 651 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 VAPBO95292 243 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 LMNAP02545 664 aaKnown RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 ZNF806P0C7X5 589 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 GIMD1P0DJR0 217 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 SSTR1P30872 391 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 HADHAP40939 763 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 MAGEA4P43358 317 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 TNNT3P45378 269 aaPredicted RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 GPR1P46091 355 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 RABIFP47224 123 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 AFF3P51826 1226 aaKnown RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 CTSCP53634 463 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 OVGP1Q12889 678 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 GRIK2Q13002 908 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 SF3A2Q15428 464 aaKnown RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 DUOXA1Q1HG43 343 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 SKIDA1Q1XH10 827 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 ZNF423Q2M1K9 1284 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 TYSND1Q2T9J0 566 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 ALG11Q2TAA5 492 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 DNAJC21Q5F1R6 531 aaKnown RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 PRAMEF14Q5SWL7 426 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 RAET1GQ6H3X3 334 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 CCNI2Q6ZMN8 369 aaPredicted RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 MACC1Q6ZN28 852 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 SNX20Q7Z614 316 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 PTAR1Q7Z6K3 402 aaPredicted RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 SERPINA9Q86WD7 417 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 DENND6AQ8IWF6 608 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 CNTN4Q8IWV2 1026 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 ZBED8Q8IZ13 594 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 RGL4Q8IZJ4 473 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 RASGEF1AQ8N9B8 481 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 EIF1ADQ8N9N8 165 aaKnown RBP9.2□□□□□ -0.94
VPS35-211ENST00000569950 GPR150Q8NGU9 434 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 IFT81Q8WYA0 676 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 HIC2Q96JB3 615 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 C9orf72Q96LT7 481 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 BOCQ9BWV1 1114 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 C1QTNF7Q9BXJ2 289 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 FUT8Q9BYC5 575 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 FOXP3Q9BZS1 431 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 ASB8Q9H765 288 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 WDR26Q9H7D7 661 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 IL21RQ9HBE5 538 aa9.2□□□□□ -0.94
VPS35-211ENST00000569950 LRRC4CQ9HCJ2 640 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms