RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RETSATQ6NUM9 610 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 LILRA6Q6PI73 481 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 PHYKPLQ8IUZ5 450 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 GPR65Q8IYL9 337 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 LINGO1Q96FE5 620 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 MRPL1Q9BYD6 325 aaKnown RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 SEMA4BQ9NPR2 832 aaPredicted RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 BATF3Q9NR55 127 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 MRGBPQ9NV56 204 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 GIMAP2Q9UG22 337 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 INTS6Q9UL03 887 aaKnown RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 LRCH1Q9Y2L9 728 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 SH3BP1Q9Y3L3 701 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 PCDHGA7Q9Y5G6 932 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 A0A1W2PRU2 124 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 SYCE1LA8MT33 242 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 HTRA2O43464 458 aaPredicted RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 ESR1P03372 595 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 CLCN7P51798 805 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 LCP2Q13094 533 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 LRP8Q14114 963 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 REP15Q6BDI9 236 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 IZUMO2Q6UXV1 221 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 NAT14Q8WUY8 206 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 ACDQ96AP0 544 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 SMG9Q9H0W8 520 aaKnown RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 CACNA2D2Q9NY47 1150 aa20.12■□□□□ 0.81
CLN3-230ENST00000568076 UTP6Q9NYH9 597 aaKnown RBP20.12■□□□□ 0.81
CLN3-230ENST00000568076 PTPRSQ13332 1948 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 DENND4CQ5VZ89 1909 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 LRG1P02750 347 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 IL2P60568 153 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 BCL2L1Q07817 233 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 CDC16Q13042 620 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 GEN1Q17RS7 908 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 MPP7Q5T2T1 576 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 ANKS6Q68DC2 871 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 PAOXQ6QHF9 649 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 FAM151BQ6UXP7 276 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 OTOP2Q7RTS6 562 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 PCDH20Q8N6Y1 951 aaKnown RBP20.11■□□□□ 0.81
CLN3-230ENST00000568076 VOPP1Q96AW1 172 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 C1QTNF3Q9BXJ4 246 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 TNKS2Q9H2K2 1166 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 SARS2Q9NP81 518 aaKnown RBP20.11■□□□□ 0.81
CLN3-230ENST00000568076 SLC30A1Q9Y6M5 507 aa20.11■□□□□ 0.81
CLN3-230ENST00000568076 A0A0J9YYE9 177 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 STX16O14662 325 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 TRBC1P01850 177 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 C8AP07357 584 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 GPX3P22352 226 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 PRDX3P30048 256 aaKnown RBP20.1■□□□□ 0.81
CLN3-230ENST00000568076 ATP4BP51164 291 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 CREMQ03060 361 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 STX5Q13190 355 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 MAPRE2Q15555 327 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 CDKN3Q16667 212 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 PLEKHG6Q3KR16 790 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 MPPE1Q53F39 396 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 FUNDC1Q8IVP5 155 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 FIBINQ8TAL6 211 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 GDPD5Q8WTR4 605 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 PAWRQ96IZ0 340 aaKnown RBP20.1■□□□□ 0.81
CLN3-230ENST00000568076 ECSITQ9BQ95 431 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 SLC46A2Q9BY10 475 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ZNF225Q9UK10 706 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 PCTPQ9UKL6 214 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ASB1Q9Y576 335 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 COMMD10Q9Y6G5 202 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 CARNS1A5YM72 827 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 E5RI56 91 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 LEFTY2O00292 366 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 SNRPB2P08579 225 aaKnown RBP20.1■□□□□ 0.81
CLN3-230ENST00000568076 ME2P23368 584 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 PSME3P61289 254 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ECT2LQ008S8 904 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 FLOT2Q14254 428 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 GRB7Q14451 532 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 DGKKQ5KSL6 1271 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 UGT3A1Q6NUS8 523 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ZSWIM9Q86XI8 627 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 STK40Q8N2I9 435 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 GRIN3AQ8TCU5 1115 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ZNF483Q8TF39 744 aaPredicted RBP20.1■□□□□ 0.81
CLN3-230ENST00000568076 UCMAQ8WVF2 138 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ESAMQ96AP7 390 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ZFYVE1Q9HBF4 777 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ABCB8Q9NUT2 735 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 KIAA1522Q9P206 1035 aaPredicted RBP20.1■□□□□ 0.81
CLN3-230ENST00000568076 SARDHQ9UL12 918 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 BTRCQ9Y297 605 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 ZNF510Q9Y2H8 683 aa20.1■□□□□ 0.81
CLN3-230ENST00000568076 TRAV19A0A0A6YYK7 116 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.09■□□□□ 0.81
CLN3-230ENST00000568076 PRMT5O14744 637 aaPredicted RBP20.09■□□□□ 0.81
CLN3-230ENST00000568076 EFCAB14O75071 495 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 CLDN7O95471 211 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 PRAMEF1O95521 474 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 HNF1BP35680 557 aa20.09■□□□□ 0.81
CLN3-230ENST00000568076 CTSOP43234 321 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms