RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 RBFAQ8N0V3 343 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 MGARPQ8TDB4 240 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 HMGB4Q8WW32 186 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 CCDC97Q96F63 343 aaPredicted RBP30.33■■■□□ 2.45
CTCF-203ENST00000566078 TSPAN17Q96FV3 270 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 BOCQ9BWV1 1114 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 TBC1D17Q9HA65 648 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 SMOXQ9NWM0 555 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 NKIRAS1Q9NYS0 192 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 FZD4Q9ULV1 537 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 NCKAP1Q9Y2A7 1128 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 C2P06681 752 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 ZNF7P17097 686 aaPredicted RBP30.33■■■□□ 2.45
CTCF-203ENST00000566078 GMPRP36959 345 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 CSRP3P50461 194 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 CDKN2DP55273 166 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 CREB5Q02930 508 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 TAF1BQ53T94 588 aaPredicted RBP30.33■■■□□ 2.45
CTCF-203ENST00000566078 TRIM67Q6ZTA4 783 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 USP30Q70CQ3 517 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 ZNF765Q7L2R6 523 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 SYT13Q7L8C5 426 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 KBTBD6Q86V97 674 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 OR14C36Q8NHC7 312 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 TCP10LQ8TDR4 215 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 BIRC8Q96P09 236 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 NELL2Q99435 816 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 IQCGQ9H095 443 aaKnown RBP30.33■■■□□ 2.45
CTCF-203ENST00000566078 TMPRSS11EQ9UL52 423 aa30.33■■■□□ 2.45
CTCF-203ENST00000566078 FADS2P1A8MWK0 482 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 TOP3BO95985 862 aaKnown RBP30.32■■■□□ 2.44
CTCF-203ENST00000566078 CRABP2P29373 138 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 DGKEP52429 567 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 ADPRHP54922 357 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 SFSWAPQ12872 951 aaKnown RBP30.32■■■□□ 2.44
CTCF-203ENST00000566078 CTSL3PQ5NE16 218 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 CLPBQ9H078 707 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 P2RY12Q9H244 342 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 ZDHHC3Q9NYG2 299 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 TLK1Q9UKI8 766 aa30.32■■■□□ 2.44
CTCF-203ENST00000566078 IGLON5A6NGN9 336 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 PRMT5O14744 637 aaPredicted RBP30.31■■■□□ 2.44
CTCF-203ENST00000566078 SLC35E2BP0CK96 405 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 PKMP14618 531 aaKnown RBP30.31■■■□□ 2.44
CTCF-203ENST00000566078 FDXRP22570 491 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 SLC18A1P54219 525 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 ADARP55265 1226 aaKnown RBP30.31■■■□□ 2.44
CTCF-203ENST00000566078 IRF9Q00978 393 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 GAS6Q14393 721 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 ITIH4Q14624 930 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 SETMARQ53H47 684 aaPredicted RBP30.31■■■□□ 2.44
CTCF-203ENST00000566078 CDHR3Q6ZTQ4 885 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 FAM124AQ86V42 546 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 GJD3Q8N144 294 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 COPS8Q99627 209 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 MLXIPLQ9NP71 852 aa30.31■■■□□ 2.44
CTCF-203ENST00000566078 ATG13O75143 517 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 TM7SF2O76062 418 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 ZWINTO95229 277 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 ESR1P03372 595 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 CCT5P48643 541 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 CBX1P83916 185 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 GPRC6AQ5T6X5 926 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 PIM3Q86V86 326 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 C12orf65Q9H3J6 166 aaKnown RBP30.3■■■□□ 2.44
CTCF-203ENST00000566078 CD93Q9NPY3 652 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 ANKRD6Q9Y2G4 727 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 PCDHB1Q9Y5F3 818 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 COMMD10Q9Y6G5 202 aa30.3■■■□□ 2.44
CTCF-203ENST00000566078 PRR23AA6NEV1 266 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 STK25O00506 426 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 GLRA3O75311 464 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 RHOBTB1O94844 696 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 RPS3P23396 243 aaKnown RBP eCLIP30.29■■■□□ 2.44
CTCF-203ENST00000566078 CRHR1P34998 444 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 SEL1L3Q68CR1 1132 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 GDAP1Q8TB36 358 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 INTS9Q9NV88 658 aaKnown RBP30.29■■■□□ 2.44
CTCF-203ENST00000566078 C2orf42Q9NWW7 574 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 SLC17A7Q9P2U7 560 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 GNPTGQ9UJJ9 305 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 TM9SF1O15321 606 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 SEPT7Q16181 437 aaKnown RBP30.29■■■□□ 2.44
CTCF-203ENST00000566078 RAET1GQ6H3X3 334 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 PELI3Q8N2H9 469 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 PGBD3Q8N328 593 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 FAM136AQ96C01 138 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 VPS35Q96QK1 796 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 OSBPL6Q9BZF3 934 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 CD320Q9NPF0 282 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 DCDC2Q9UHG0 476 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 ADAM21Q9UKJ8 722 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 ZFR2Q9UPR6 939 aaKnown RBP30.29■■■□□ 2.44
CTCF-203ENST00000566078 ACOT9Q9Y305 439 aa30.29■■■□□ 2.44
CTCF-203ENST00000566078 NIPSNAP2O75323 286 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 AKT1P31749 480 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 TIAL1Q01085 375 aaKnown RBP eCLIP30.28■■■□□ 2.44
CTCF-203ENST00000566078 GUCY1A3Q02108 690 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 DPTQ07507 201 aa30.28■■■□□ 2.44
CTCF-203ENST00000566078 LRRC14Q15048 493 aa30.28■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms