RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 EFCAB7A8K855 629 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 TMEM253P0C7T8 217 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 FAM87AP0C7U9 286 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 EPHA4P54764 986 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 MC2RQ01718 297 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 DCAF12Q5T6F0 453 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 SLC9A4Q6AI14 798 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 TADA1Q96BN2 335 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 IMP4Q96G21 291 aaKnown RBP16.94■□□□□ 0.3
CLN3-216ENST00000565316 TEFMQ96QE5 360 aaKnown RBP16.94■□□□□ 0.3
CLN3-216ENST00000565316 DNAJC7Q99615 494 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 NFKBIL1Q9UBC1 381 aaPredicted RBP16.94■□□□□ 0.3
CLN3-216ENST00000565316 PILRAQ9UKJ1 303 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 KCNK6Q9Y257 313 aa16.94■□□□□ 0.3
CLN3-216ENST00000565316 ZFC3H1O60293 1989 aaKnown RBP16.93■□□□□ 0.3
CLN3-216ENST00000565316 FLNCQ14315 2725 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 MAST4O15021 2626 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 KIR2DS5A0A0G2JLQ3 304 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 A0A0G2JNG1 304 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 SSU72P8A0A1W2PR75 194 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 OR5K4A6NMS3 321 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 KIR2DS3K7RE56 304 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 GRID2O43424 1007 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 ACP5P13686 325 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 F3P13726 295 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 SLC2A4P14672 509 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 DCDC1P59894 354 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 NFATC2Q13469 925 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 KIR2DS5Q14953 304 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 SLC14A2Q15849 920 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 SLC9B2Q86UD5 537 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 OR8K1Q8NGG5 319 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 OLFM3Q96PB7 478 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 FAM117AQ9C073 453 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 XPO4Q9C0E2 1151 aaKnown RBP16.93■□□□□ 0.3
CLN3-216ENST00000565316 EPB41L1Q9H4G0 881 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 STN1Q9H668 368 aaKnown RBP16.93■□□□□ 0.3
CLN3-216ENST00000565316 ZFYVE1Q9HBF4 777 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 MAGEE1Q9HCI5 957 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 FBXO8Q9NRD0 319 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 GEMIN8Q9NWZ8 242 aaKnown RBP16.93■□□□□ 0.3
CLN3-216ENST00000565316 ATXN10Q9UBB4 475 aa16.93■□□□□ 0.3
CLN3-216ENST00000565316 LRRD1A4D1F6 860 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 GPR89AB7ZAQ6 455 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 MTA2O94776 668 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 WISP1O95388 367 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 GPR89BP0CG08 455 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 LIFP15018 202 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 ZNF8P17098 575 aaPredicted RBP16.92■□□□□ 0.3
CLN3-216ENST00000565316 ARHGAP25P42331 645 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 UBE2IP63279 158 aaKnown RBP16.92■□□□□ 0.3
CLN3-216ENST00000565316 KCNC4Q03721 635 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 GALNT3Q14435 633 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 MESDQ14696 234 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 CLCA4Q14CN2 919 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 PDK1Q15118 436 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 ANKS6Q68DC2 871 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 PDPK2PQ6A1A2 396 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 PRICKLE2Q7Z3G6 844 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 TMC3Q7Z5M5 1100 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 FAM129CQ86XR2 697 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 CACNA2D3Q8IZS8 1091 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 IL22RA1Q8N6P7 574 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 AVL9Q8NBF6 648 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 GPR26Q8NDV2 337 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 SLC35G2Q8TBE7 412 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 NCSTNQ92542 709 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 RTP4Q96DX8 246 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 ZSCAN5AQ9BUG6 496 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.92■□□□□ 0.3
CLN3-216ENST00000565316 SLC25A51Q9H1U9 297 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 OR2AG1Q9H205 316 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 CLMPQ9H6B4 373 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 UCK1Q9HA47 277 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 TRIM39Q9HCM9 518 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 RAD18Q9NS91 495 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 CPNE7Q9UBL6 633 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 HEY1Q9Y5J3 304 aa16.92■□□□□ 0.3
CLN3-216ENST00000565316 HEMK1Q9Y5R4 338 aaPredicted RBP16.92■□□□□ 0.3
CLN3-216ENST00000565316 LILRA5A6NI73 299 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 PRR19A6NJB7 356 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 PYCARD-AS1I3L0S3 204 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 TERTO14746 1132 aaKnown RBP16.91■□□□□ 0.3
CLN3-216ENST00000565316 CHUKO15111 745 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 CAPN5O15484 640 aaPredicted RBP16.91■□□□□ 0.3
CLN3-216ENST00000565316 RAD1O60671 282 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 SNX2O60749 519 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 ZNF569Q5MCW4 686 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 ZFYVE27Q5T4F4 411 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 LRRC38Q5VT99 294 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 NT5DC3Q86UY8 548 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 TRAM1L1Q8N609 369 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 ZPBPQ9BS86 351 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 SPATA16Q9BXB7 569 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 BRD8Q9H0E9 1235 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 ADNPQ9H2P0 1102 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 PRDM8Q9NQV8 689 aa16.91■□□□□ 0.3
CLN3-216ENST00000565316 A8MU76 341 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 APOL1O14791 398 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 SUV39H1O43463 412 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms