RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 HEATR9A2RTY3 570 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 CTAGE15A4D2H0 777 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 C2orf81A6NN90 581 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 AGAP14A8MT82 685 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 GOLGA8KD6RF30 607 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 GOLGA8TH3BQL2 631 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 H7C0S8 307 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 SGTAO43765 313 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 DNAJC6O75061 913 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 SRP72O76094 671 aaKnown RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 CSF2P04141 144 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 HOXC4P09017 264 aaPredicted RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 CTAGE8P0CG41 777 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 MLNP12872 115 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 CD59P13987 128 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 NME1P15531 152 aaKnown RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 EPHA8P29322 1005 aaPredicted RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 NPY2RP49146 381 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 B4GALNT1Q00973 533 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 OVGP1Q12889 678 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 C1orf61Q13536 156 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 MORF4L2Q15014 288 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 PCID2Q5JVF3 399 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 UBAP2Q5T6F2 1119 aaKnown RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 GPRC6AQ5T6X5 926 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 STPG1Q5TH74 334 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 XKR5Q6UX68 686 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 MARK2Q7KZI7 788 aaKnown RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 RD3Q7Z3Z2 195 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 RABEPKQ7Z6M1 372 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 ADGRG6Q86SQ4 1221 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 LDB1Q86U70 411 aaPredicted RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 CTAGE6Q86UF2 777 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 HOOK3Q86VS8 718 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 PARGQ86W56 976 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 HID1Q8IV36 788 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 CTAGE4Q8IX94 777 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 PHACTR4Q8IZ21 702 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 SLC25A45Q8N413 288 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 PPHLN1Q8NEY8 458 aaKnown RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 ZNF398Q8TD17 642 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 SAP25Q8TEE9 199 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 STYXQ8WUJ0 223 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 BTN2A2Q8WVV5 523 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 SEC14L1Q92503 715 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 GLYATL1Q969I3 302 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 HDAC10Q969S8 669 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 ELF4Q99607 663 aaPredicted RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 ZSCAN5AQ9BUG6 496 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 LRRC61Q9BV99 259 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 KIFC1Q9BW19 673 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 BOCQ9BWV1 1114 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 IL22Q9GZX6 179 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 ASB8Q9H765 288 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 ERVMER34-1Q9H9K5 563 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 PHPT1Q9NRX4 125 aaPredicted RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 DNAAF2Q9NVR5 837 aaKnown RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 ATXN10Q9UBB4 475 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 ANAPC5Q9UJX4 755 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 SLC17A4Q9Y2C5 497 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 PKP3Q9Y446 797 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 ADAMTS20P59510 1910 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 PCM1Q15154 2024 aa9.7□□□□□ -0.86
CLK3-208ENST00000562626 CNOT1A5YKK6 2376 aaKnown RBP9.7□□□□□ -0.86
CLK3-208ENST00000562626 TRBV5-4A0A0C4DH59 114 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ZCWPW2A0A1B0GU75 182 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 PRSS38A1L453 326 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 CACNB4O00305 520 aaPredicted RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 PIAS2O75928 621 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 GOT2P00505 430 aaKnown RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 SYPP08247 313 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 MYF5P13349 255 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ZNF8P17098 575 aaPredicted RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 JUNDP17535 347 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ECHS1P30084 290 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ELK3P41970 407 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 RXRGP48443 463 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ARCN1P48444 511 aaKnown RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 CTSCP53634 463 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 SRP54P61011 504 aaKnown RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 GUCY2DQ02846 1103 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 NFATC2Q13469 925 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 TUBB2AQ13885 445 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 UAP1L1Q3KQV9 507 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 BBS9Q3SYG4 887 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 MAATS1Q7Z4T9 603 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ANKMY2Q8IV38 441 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ZNF547Q8IVP9 402 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 RASGEF1AQ8N9B8 481 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ZNF548Q8NEK5 533 aaPredicted RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 OR56A4Q8NGH8 313 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 FAM174AQ8TBP5 190 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 FBXO25Q8TCJ0 367 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ART4Q93070 314 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 ZNF669Q96BR6 464 aaPredicted RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 SCARF2Q96GP6 870 aaPredicted RBP9.69□□□□□ -0.86
CLK3-208ENST00000562626 CAMK1GQ96NX5 476 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 VPS35Q96QK1 796 aa9.69□□□□□ -0.86
CLK3-208ENST00000562626 TUBB2BQ9BVA1 445 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms