RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IRF9Q00978 393 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 MAD2L1Q13257 205 aaPredicted RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 SQLEQ14534 574 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 DHCR24Q15392 516 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 GSTA3Q16772 222 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 GEN1Q17RS7 908 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CTC1Q2NKJ3 1217 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ARL13AQ5H913 290 aaPredicted RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 COQ5Q5HYK3 327 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 PLEKHS1Q5SXH7 462 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ZNF678Q5SXM1 525 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 PPP2R2DQ66LE6 453 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 SULT1C3Q6IMI6 304 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 LINGO4Q6UY18 593 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 PRR23BQ6ZRT6 265 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 SPATA31D4Q6ZUB0 917 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 LYSMD3Q7Z3D4 306 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 TRMT11Q7Z4G4 463 aaKnown RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 GRASPQ7Z6J2 395 aaPredicted RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 TMCO2Q7Z6W1 182 aaPredicted RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 GPR149Q86SP6 731 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 GPSM1Q86YR5 675 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CEP97Q8IW35 865 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 APCDD1Q8J025 514 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 PLD6Q8N2A8 252 aaKnown RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 TRAM1L1Q8N609 369 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 TEX9Q8N6V9 391 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CCNYL1Q8N7R7 359 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 MDGA1Q8NFP4 955 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 RFWD2Q8NHY2 731 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ATL1Q8WXF7 558 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ASB16Q96NS5 453 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 VPS35Q96QK1 796 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 SORT1Q99523 831 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 NDNQ99608 321 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 OLFM1Q99784 485 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 C17orf80Q9BSJ5 609 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 NMUR2Q9GZQ4 415 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 P2RY12Q9H244 342 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 VCX3BQ9H321 246 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 OCEL1Q9H607 264 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 NSUN3Q9H649 340 aaKnown RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 EPHX3Q9H6B9 360 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 COG4Q9H9E3 785 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 MEAF6Q9HAF1 191 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CPSF2Q9P2I0 782 aaKnown RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 SLC17A6Q9P2U8 582 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 EVLQ9UI08 416 aaPredicted RBP7.46□□□□□ -1.22
VPS39-204ENST00000561818 FKBPLQ9UIM3 349 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CDH7Q9ULB5 785 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ERVW-1Q9UQF0 538 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 CRYL1Q9Y2S2 319 aa7.46□□□□□ -1.22
VPS39-204ENST00000561818 ANKRD36A6QL64 1941 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 IGLV3-16A0A075B6K0 115 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 CCDC78A2IDD5 438 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 GRXCR2A6NFK2 248 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SUPT3HB4E1H0 165 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 IFRD1O00458 451 aaPredicted RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 BTN3A1O00481 513 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 MOSPD3O75425 235 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SUPT3HO75486 399 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 GPC4O75487 556 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 RFPL2O75678 378 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SUPT7LO94864 414 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 OTCP00480 354 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 PRKCGP05129 697 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 PDHA1P08559 390 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 HIST1H2AGP0C0S8 130 aaPredicted RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 MPC1LP0DKB6 136 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 KITP10721 976 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 EPCAMP16422 314 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 HOXB6P17509 224 aaKnown RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 HIST1H2ADP20671 130 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SP100P23497 879 aaPredicted RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 ITGB7P26010 798 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 TARSP26639 723 aaKnown RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 CCR2P41597 374 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 MTHFRP42898 656 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 GLRBP48167 497 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SPINT3P49223 89 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 RAP1GDS1P52306 607 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 PNLIPRP1P54315 467 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 CDKN2DP55273 166 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ZXDBP98169 803 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 XIAPP98170 497 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 FCHO2Q0JRZ9 810 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 PEX6Q13608 980 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 PCBP2Q15366 365 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS39-204ENST00000561818 EML3Q32P44 896 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ATAT1Q5SQI0 421 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 RBM20Q5T481 1227 aaKnown RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 ATXN7L2Q5T6C5 722 aaPredicted RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 PRMT9Q6P2P2 845 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 DPY19L3Q6ZPD9 716 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ZCCHC23Q6ZST2 131 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 DPPA4Q7L190 304 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SPATA19Q7Z5L4 167 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 CUZD1Q86UP6 607 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ADIPOR2Q86V24 386 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SERPINA9Q86WD7 417 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms