RNA–Protein interactions for RNA: ENST00000560433.5

SNRPA1-211, Transcript of small nuclear ribonucleoprotein polypeptide A', human

TSL 2

Gene SNRPA1, Length 2,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRPA1-211	ENST00000560433	NCKIPSD	Q9NZQ3	722 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ZFP69B	Q9UJL9	534 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	HAO1	Q9UJM8	370 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	RPL26L1	Q9UNX3	145 aa	Known RBP	10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CAPN7	Q9Y6W3	813 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	NPEPPSL1	A6NEC2	478 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	C16orf96	A6NNT2	1141 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433		H3BQ06	376 aa	Predicted RBP	10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PPP6C	O00743	305 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	NEMP1	O14524	444 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	JUN	P05412	331 aa	Known RBP	10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PSMC3	P17980	439 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	GRK2	P25098	689 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PSMA3	P25788	255 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	IL12RB1	P42701	662 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CDH13	P55290	713 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PFKP	Q01813	784 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ARHGEF7	Q14155	803 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SETDB1	Q15047	1291 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PFKFB4	Q16877	469 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SERPINA13P	Q6UXR4	307 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SNX20	Q7Z614	316 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	LSMEM2	Q8N112	164 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ZNF557	Q8N988	423 aa	Predicted RBP	10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	TERB1	Q8NA31	727 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	RAB3IL1	Q8TBN0	382 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CD200R1	Q8TD46	325 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	FAM8A1	Q9UBU6	413 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	HCN2	Q9UL51	889 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SLC8A2	Q9UPR5	921 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SLC27A6	Q9Y2P4	619 aa		10.79	□□□□□ -0.68
SNRPA1-211	ENST00000560433	BTN3A1	O00481	513 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	DIAPH2	O60879	1101 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	IL1B	P01584	269 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	APOA4	P06727	396 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ITGAL	P20701	1170 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	XPA	P23025	273 aa	Predicted RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	LTBR	P36941	435 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SEC13	P55735	322 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	GALNTL6	Q49A17	601 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PTRHD1	Q6GMV3	140 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	TMEM184A	Q6ZMB5	413 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PARS2	Q7L3T8	475 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	WDR75	Q8IWA0	830 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	MCCC1	Q96RQ3	725 aa	Predicted RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	LYSMD1	Q96S90	227 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	TCF12	Q99081	682 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SPATA16	Q9BXB7	569 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	P2RY12	Q9H244	342 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	COG4	Q9H9E3	785 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	G3BP2	Q9UN86	482 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PRMT5	O14744	637 aa	Predicted RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	VPS26A	O75436	327 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	IPO13	O94829	963 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SLC25A14	O95258	325 aa	Predicted RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	EPHX1	P07099	455 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ATP5F1	P24539	256 aa	Predicted RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ACRV1	P26436	265 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PTGER3	P43115	390 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	MLLT1	Q03111	559 aa	Predicted RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	FCHO2	Q0JRZ9	810 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	UBAP2L	Q14157	1087 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SLC9B1	Q4ZJI4	515 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CFAP157	Q5JU67	520 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	C9orf64	Q5T6V5	341 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	EGFLAM	Q63HQ2	1017 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CCDC91	Q7Z6B0	441 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CLNK	Q7Z7G1	428 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	MMAA	Q8IVH4	418 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	LINGO1	Q96FE5	620 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	NSUN5	Q96P11	429 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CLPB	Q9H078	707 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	WDR55	Q9H6Y2	383 aa	Predicted RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	TRMT6	Q9UJA5	497 aa	Known RBP	10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	APPL1	Q9UKG1	709 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	TMPRSS11E	Q9UL52	423 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SLC12A4	Q9UP95	1085 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PPIL1	Q9Y3C6	166 aa		10.78	□□□□□ -0.68
SNRPA1-211	ENST00000560433	COL4A3	Q01955	1670 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SUPT7L	O94864	414 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	TSPAN12	O95859	305 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SRPRA	P08240	638 aa	Known RBP	10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	RBP1	P09455	135 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CPA2	P48052	419 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SPINT3	P49223	89 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SUOX	P51687	545 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	CLCN7	P51798	805 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	POLR2L	P62875	67 aa	Known RBP	10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	B4GALNT1	Q00973	533 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	BNIP1	Q12981	228 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ADGRE1	Q14246	886 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PDCD2	Q16342	344 aa	Predicted RBP	10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	ZNF805	Q5CZA5	627 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	AARS2	Q5JTZ9	985 aa	Known RBP	10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PIWIL4	Q7Z3Z4	852 aa	Known RBP	10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	PELI3	Q8N2H9	469 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	SREK1	Q8WXA9	508 aa	Known RBP	10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	NUF2	Q9BZD4	464 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	DRC3	Q9H069	523 aa		10.77	□□□□□ -0.68
SNRPA1-211	ENST00000560433	TRPV4	Q9HBA0	871 aa		10.77	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms