RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PCDH12Q9NPG4 1184 aa12.59□□□□□ -0.39
USP3-213ENST00000559711 NCKIPSDQ9NZQ3 722 aa12.59□□□□□ -0.39
USP3-213ENST00000559711 TRMT6Q9UJA5 497 aaKnown RBP12.59□□□□□ -0.39
USP3-213ENST00000559711 DHRS7Q9Y394 339 aa12.59□□□□□ -0.39
USP3-213ENST00000559711 RAP2CQ9Y3L5 183 aa12.59□□□□□ -0.39
USP3-213ENST00000559711 EDDM13A0A1B0GTR0 161 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 NEMP2A6NFY4 417 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 C16orf96A6NNT2 1141 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 TBX10O75333 385 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 ECI2O75521 394 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 FSBPO95073 299 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 TSPAN12O95859 305 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 PRNPP04156 253 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 CHRM3P20309 590 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 SERPINB3P29508 390 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 MTHFRP42898 656 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 CLCN7P51798 805 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 HK2P52789 917 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 ARHGEF7Q14155 803 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 GRM2Q14416 872 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 ZNF234Q14588 700 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 OR4D1Q15615 310 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 FNDC3BQ53EP0 1204 aaKnown RBP12.58□□□□□ -0.4
USP3-213ENST00000559711 PARM1Q6UWI2 310 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 MACC1Q6ZN28 852 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 CLNKQ7Z7G1 428 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 TTC7BQ86TV6 843 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 ZNF366Q8N895 744 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 ZNF781Q8N8C0 355 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 GIMAP7Q8NHV1 300 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 FGF14Q92915 247 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 FAM136AQ96C01 138 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 CHFRQ96EP1 664 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 PDLIM5Q96HC4 596 aaKnown RBP12.58□□□□□ -0.4
USP3-213ENST00000559711 ATOH8Q96SQ7 321 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 CDH19Q9H159 772 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 GTSE1Q9NYZ3 720 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 PKD2L2Q9NZM6 624 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 NFKBIL1Q9UBC1 381 aaPredicted RBP12.58□□□□□ -0.4
USP3-213ENST00000559711 CRLS1Q9UJA2 301 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.58□□□□□ -0.4
USP3-213ENST00000559711 NUMBLQ9Y6R0 609 aa12.58□□□□□ -0.4
USP3-213ENST00000559711 RGSL1A5PLK6 1076 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 TBC1D3BA6NDS4 549 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 E5RI56 91 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 HGSO14964 777 aaPredicted RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 KERAO60938 352 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 CHRNGP07510 517 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 TPBGLP0DKB5 382 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 MTHFD2P13995 350 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 IMPDH1P20839 514 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 DCDC1P59894 354 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 IL2P60568 153 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 PRKAA1Q13131 559 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 PREPLQ4J6C6 727 aaPredicted RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 LRRC73Q5JTD7 316 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 FAM91A1Q658Y4 838 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 NAIF1Q69YI7 327 aaPredicted RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 RFLNAQ6ZTI6 216 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 DPPA4Q7L190 304 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 MAVSQ7Z434 540 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 SFTPA1Q8IWL2 248 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 CCNYL1Q8N7R7 359 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 SIDT2Q8NBJ9 832 aaKnown RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 STAG3L4Q8TBR4 150 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 UCMAQ8WVF2 138 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 ULK4Q96C45 1275 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 L3HYPDHQ96EM0 354 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 MOCOSQ96EN8 888 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 CCDC97Q96F63 343 aaPredicted RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 MSLNLQ96KJ4 702 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 KXD1Q9BQD3 176 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 BOCQ9BWV1 1114 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 SAR1AQ9NR31 198 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 RAD18Q9NS91 495 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 DNAJC28Q9NX36 388 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 ZDHHC3Q9NYG2 299 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 GNPTGQ9UJJ9 305 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 ZFP69BQ9UJL9 534 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 PRDM4Q9UKN5 801 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 SARDHQ9UL12 918 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 PPM1HQ9ULR3 514 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 IGLV3-16A0A075B6K0 115 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 IQCF5A8MTL0 148 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 ARNTLO00327 626 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 SMIM24O75264 130 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 ATP5HO75947 161 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 GDI1P31150 447 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 LTBRP36941 435 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 GRIA2P42262 883 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 NSG1P42857 185 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 RPL14P50914 215 aaKnown RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 ZBTB16Q05516 673 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 GALNT1Q10472 559 aaPredicted RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 RALGDSQ12967 914 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 ELAVL3Q14576 367 aaKnown RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 COL19A1Q14993 1142 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 ATP13A5Q4VNC0 1218 aa12.57□□□□□ -0.4
USP3-213ENST00000559711 PTRHD1Q6GMV3 140 aaKnown RBP12.57□□□□□ -0.4
USP3-213ENST00000559711 HSD11B1LQ7Z5J1 315 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms