RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CEP57Q86XR8 500 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PALB2Q86YC2 1186 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 NRROSQ86YC3 692 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CAMK1DQ8IU85 385 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ARID3BQ8IVW6 561 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 DSELQ8IZU8 1212 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 RASGEF1CQ8N431 466 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 GUF1Q8N442 669 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 PCDH20Q8N6Y1 951 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 POMGNT2Q8NAT1 580 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 C7orf57Q8NEG2 295 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 OR1J2Q8NGS2 313 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PRSS3P2Q8NHM4 247 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CFAP61Q8NHU2 1237 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 GSDMBQ8TAX9 411 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 HM13Q8TCT9 377 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 BICD2Q8TD16 824 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 TRPC4APQ8TEL6 797 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 NSMCE1Q8WV22 266 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SLC44A1Q8WWI5 657 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 TRIB2Q92519 343 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 LPGAT1Q92604 370 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 APBB2Q92870 758 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SLC25A28Q96A46 364 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 COQ8BQ96D53 544 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 RMDN1Q96DB5 314 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ZFYVE19Q96K21 471 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 FER1L6-AS2Q96M78 137 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 FCRL4Q96PJ5 515 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CSF3RQ99062 836 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 GFI1Q99684 422 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 CMKLR1Q99788 373 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 GPATCH1Q9BRR8 931 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 NAA11Q9BSU3 229 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 DESI2Q9BSY9 194 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 HGH1Q9BTY7 390 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 KRTAP4-3Q9BYR4 195 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ISCUQ9H1K1 167 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SLCO5A1Q9H2Y9 848 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 EBF3Q9H4W6 596 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 GRPEL1Q9HAV7 217 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 KRCC1Q9NPI7 259 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 CNGB3Q9NQW8 809 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 HAO2Q9NYQ3 351 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SELENONQ9NZV5 590 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 LARSQ9P2J5 1176 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 DNAJB4Q9UDY4 337 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 STK39Q9UEW8 545 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 TSPYL4Q9UJ04 414 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 HACL1Q9UJ83 578 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ANAPC5Q9UJX4 755 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 ANAPC2Q9UJX6 822 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 FBXW11Q9UKB1 542 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 PPIEQ9UNP9 301 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 EXO1Q9UQ84 846 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 ZNF148Q9UQR1 794 aa1.64□□□□□ -2.15
USP3-209ENST00000558925 SRPRBQ9Y5M8 271 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 SEC23IPQ9Y6Y8 1000 aaKnown RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 SOS1Q07889 1333 aaPredicted RBP1.64□□□□□ -2.15
USP3-209ENST00000558925 A0A0B4J293 547 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 hDV102S1A0JD36 115 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 FEZF1A0PJY2 475 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 EIF4E1BA6NMX2 242 aaKnown RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 MAGEB17A8MXT2 336 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 INAFM1C9JVW0 142 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 MS4A18H0YCH9 400 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 TMEM189-UBE2V1I3L0A0 370 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 PLK4O00444 970 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 SOCS6O14544 535 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 MAP2K7O14733 419 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 TNFRSF13BO14836 293 aaPredicted RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 CLGNO14967 610 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 SLC7A4O43246 635 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 RGS14O43566 566 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 ZC3H11AO75152 810 aaKnown RBP eCLIP1.63□□□□□ -2.15
USP3-209ENST00000558925 ZNF217O75362 1048 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 MTA2O94776 668 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 CELF2O95319 508 aaKnown RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 TGDSO95455 350 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 PENKP01210 267 aaPredicted RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 KLKB1P03952 638 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 HIST1H2ABP04908 130 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 CYP1A2P05177 515 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 ACTN1P12814 892 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 HOXB2P14652 356 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 NAGAP17050 411 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 HIST1H2ADP20671 130 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 MUTP22033 750 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 UBA1P22314 1058 aaKnown RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 HRH2P25021 359 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 SSTR2P30874 369 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 HOXA11P31270 313 aaPredicted RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 HOXC9P31274 260 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 TLX1P31314 330 aaPredicted RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 GABRA5P31644 462 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 RPL3P39023 403 aaKnown RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 APOBEC1P41238 236 aaKnown RBP1.63□□□□□ -2.15
USP3-209ENST00000558925 PRKCIP41743 596 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 PRCPP42785 496 aa1.63□□□□□ -2.15
USP3-209ENST00000558925 ME1P48163 572 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms