RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PIH1D3Q9NQM4 214 aaKnown RBP5.04□□□□□ -1.6
SCFD1-209ENST00000553280 TRMT1Q9NXH9 659 aaKnown RBP5.04□□□□□ -1.6
SCFD1-209ENST00000553280 OR6C3Q9NZP0 311 aa5.04□□□□□ -1.6
SCFD1-209ENST00000553280 COG5Q9UP83 839 aa5.04□□□□□ -1.6
SCFD1-209ENST00000553280 SRPRBQ9Y5M8 271 aaKnown RBP5.04□□□□□ -1.6
SCFD1-209ENST00000553280 ARHGEF17Q96PE2 2063 aaPredicted RBP5.04□□□□□ -1.6
SCFD1-209ENST00000553280 ZMYM2Q9UBW7 1377 aa5.04□□□□□ -1.6
SCFD1-209ENST00000553280 KDM4EB2RXH2 506 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 DIAPH2O60879 1101 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 ZWINTO95229 277 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 TGDSO95455 350 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 ATP5BP06576 529 aaKnown RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 GJA1P17302 382 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 NR2F2P24468 414 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 LMO1P25800 156 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 ATP5DP30049 168 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 HNRNPH1P31943 449 aaKnown RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 KRT2P35908 639 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 EIF2S3P41091 472 aaKnown RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 MATR3P43243 847 aaKnown RBP eCLIP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 CCR10P46092 362 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 POLGP54098 1239 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 P2RX3P56373 397 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 ZP1P60852 638 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 RALGDSQ12967 914 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 TNIP1Q15025 636 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 EIF2S3LQ2VIR3 472 aaKnown RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 WASHC2DQ5SRD0 308 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 DCAF12L2Q5VW00 463 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 NSUN5P2Q63ZY6 315 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 LCN10Q6JVE6 187 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 B3GNT6Q6ZMB0 384 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 INTS8Q75QN2 995 aaKnown RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 SNX32Q86XE0 403 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 CEP57Q86XR8 500 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 SETD6Q8TBK2 473 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 TAS1R2Q8TE23 839 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 INPP5DQ92835 1189 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 SECISBP2LQ93073 1101 aaKnown RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 FAM162AQ96A26 154 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 CITED2Q99967 270 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 HAUS8Q9BT25 410 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 MBNL1Q9NR56 388 aaKnown RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 STK39Q9UEW8 545 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 PCDHGA5Q9Y5G8 931 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 SQORQ9Y6N5 450 aa5.03□□□□□ -1.6
SCFD1-209ENST00000553280 ZFP37Q9Y6Q3 630 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-209ENST00000553280 H0YIN7 160 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 IPO8O15397 1037 aaKnown RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 HSPA12AO43301 675 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 SLCO2B1O94956 709 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 VNN2O95498 520 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 TRUB2O95900 331 aaKnown RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 HOXC13P31276 330 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 ME1P48163 572 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 ALDH7A1P49419 539 aaKnown RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 CDH13P55290 713 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 CSNK2A1P68400 391 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 MYBPC2Q14324 1141 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 KRT33BQ14525 404 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 ASIC2Q16515 512 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 ZNF284Q2VY69 593 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 MYLK3Q32MK0 819 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 SUPT20HL1Q3ZLR7 823 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 PPP6R3Q5H9R7 873 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 SLC10A5Q5PT55 438 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 C10orf25Q5T742 122 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 CAVIN1Q6NZI2 390 aaKnown RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 PET117Q6UWS5 81 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 TPRG1Q6ZUI0 275 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 SHFQ7M4L6 423 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 YTHDF3Q7Z739 585 aaKnown RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 CCDC190Q86UF4 302 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 IQCA1Q86XH1 822 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 BEST3Q8N1M1 668 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 AADATQ8N5Z0 425 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 ZNF713Q8N859 430 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 CSNK2A3Q8NEV1 391 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 MPLKIPQ8TAP9 179 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 AFAP1L1Q8TED9 768 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 SPACA9Q96E40 222 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 GRAMD2BQ96HH9 432 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 GPATCH1Q9BRR8 931 aaKnown RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 TRMOQ9BU70 441 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 THUMPD3Q9BV44 507 aaKnown RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 ISCUQ9H1K1 167 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 ANKZF1Q9H8Y5 726 aa5.02□□□□□ -1.61
SCFD1-209ENST00000553280 SIRT3Q9NTG7 399 aaPredicted RBP5.02□□□□□ -1.61
SCFD1-209ENST00000553280 CGB1A6NKQ9 187 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 EIF4E1BA6NMX2 242 aaKnown RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 KCNU1A8MYU2 1149 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 MS4A18H0YCH9 400 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 I6L893 689 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-209ENST00000553280 J3KR12 359 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 ADAM10O14672 748 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 PSMA7O14818 248 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 PLPP2O43688 288 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 MOSPD3O75425 235 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 CREG1O75629 220 aa5.01□□□□□ -1.61
SCFD1-209ENST00000553280 EGFP01133 1207 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms